Gene Tpau_2900 details

Gene Information

• Locus tag: Tpau_2900
• ID: 9157068
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: -
• Start bp: 3007701
• End bp: 3009767
• Gene Length: 2067 bp
• Protein Length: 688 aa
• Translation table: 11
• GC content: 68%
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_003647837
• Protein GI: 296140594

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGAAGG AACTGACGGA GGACGATCGC CGCGCCTGGC AGGAGCTCGC GGAGGAAGTC 
CGCGGGCACC AGTTCCGCTA CTACGTGCAG GACGCGCCGG TACTCTCGGA CGGCGAGTTC 
GATGCACTGC TCAAGCGGCT CCAAGCGATG GAGGACGCGT TTCCGGAACT GGCGGTTCCG 
GATTCGCCCA CGAAGCTGGT CGGCGGCGGA TTCTCCACGG AGTTCACCGC GGTCGACCAC 
CTGGAGCGGA TGTACTCGCT GGACAACGTC TTCGACGAGG GTGAATTGCG CGAGTGGATC 
GCCCGTGTCC AGCGAGACGT GGGGGAGTCC GTCACCTTTC TCACTGAGCT GAAGATCGAC 
GGTGTCGCGC TCAACCTCGT CTACGAGGAC GGTGCGCTCG TTCGTGGCGC CACTCGCGGC 
GACGGGCGCA CCGGTGAGGA CGTCACCCTC AACGCGCGGA CTCTGCGCGA CGTACCGCAC 
CGGCTCACCC CGTCGGACGA GTTCCCGATC CCGGCGGTGC TCGAGGTCCG TGGGGAGGTC 
TTCTTCCGCC TCGCCGACTT CGAGGAACTC AACGCGGGAC TGGTCGCGGA GGGTAAACCG 
CCCTTCGCGA ACCCGCGCAA CTCCGCCGCG GGTTCACTGC GGCAGAAGAA TCCGCAGATC 
ACCTCGCGGC GCAAGCTCGG CATGATCTGC CACGGCCTCG GCCGGATCGA GGGGGGCTGG 
TCGCCCGCCT CGCTGCACGA GGCGTACCGG GCACTGGCGG CCTGGGGGCT GCCCGTATCC 
GCCCACACCA AGCAGGTGGT GGGCGCCGAT GCCGTGGTCG ACCGGGTCTT CTACTGGGGT 
GAGCACCGGC ACGATCCCGA GCACGAGATC GACGGTCTGG TGGTGAAAGT CGACGAGATC 
GCTCTGCAAC GCCGCCTCGG TGCCACCTCG CGCGCTCCGC GCTGGGCGAT CGCCTACAAG 
TACCCGCCGG AAGAGGTCAC CACCAAACTC CTGGACATCC GCGTCAACGT GGGGCGTACC 
GGCCGGGTCA CGCCGTACGC ATACATGGCG CCGGTCACCG TCGCCGGGTC CACCGTCGAA 
TTCGCCACGC TGCACAACGC TTCCGAGGTG CAGCGCAAGG GTGTGCTCAT CGGTGACACC 
GTTACCATCC GCAAGGCCGG CGACGTCATC CCCGAGGTTC TCGGCCCGGT GGTCGACCTC 
CGCGACGGTA CTGAGAAGGC CTTCGTCATG CCGGTCACCT GTCCGGAATG CGGTGCCGCA 
CTGGCACCGT CGAAGGAGGG CGATGCCGAC ATCCGGTGCC CCAACACCGA GACCTGCCCC 
GCGCAGCTGA GGGAGCGGCT GTTCTACCTC GCGGGCCGCA CCTGTTTCGA CATCGAGGGC 
CTGGGCTACG AGGCGGCCAC CGCGCTCACC GCCTCGCCCG TGCTGCACAA CGAGGGTGAT 
GTCTTCTCGC TCACCGAGGC CGACCTCACG CAGGTTCCAC TGTTCACTAA CGACGGCGGC 
GCCCTCTCGG CGAATGCGCA GCGATTGTTG ACGAACCTCG ATGTCGCCAA GACCAAGCCA 
CTGTGGCGAG TGCTCGTGGC ACTGTCCATC CGCCACGTGG GCCCGTCGGC CGCCCGGGCG 
CTCGCCCAGG AACTCGGCAG CCTGGAGGCG ATCGCGGCGG CGGACGTCGA TCAGCTCGCC 
GAGGTCGACG GTGTGGGCCG GGTCATCGCG GAGGCGGTCG TCGAATGGTT CACCGTGGGC 
TGGCACCGTG AGATCGTCGA GAAGTGGCGT GCCGCAGGCG TCACGATGGA GGACGAGCGG 
GACGCGTCGG TACCCAGGAA CCTGGAGGGG CTCTCCATCG TGGTCACCGG CTCCCTCCAG 
AACTTCTCTC GGGACGGGGC CAAGGAGGCC ATTCTGGTCC GCGGCGGCAA GGCTGCGAGC 
AGCGTGTCCA AGAAGACCGC CTTCGTGGTG GTCGGCGACG CCCCCGGATC GAAGGCCGAC 
AAGGCCGAAC AACTCGGCGT TCCGGTCCTC GACGAGGCGG GGTTCGAGAA GCTCCTCGCC 
GAGGGCCCGG AGGCCTTCGC GCACTAG 

 

Protein sequence

MSKELTEDDR RAWQELAEEV RGHQFRYYVQ DAPVLSDGEF DALLKRLQAM EDAFPELAVP 
DSPTKLVGGG FSTEFTAVDH LERMYSLDNV FDEGELREWI ARVQRDVGES VTFLTELKID 
GVALNLVYED GALVRGATRG DGRTGEDVTL NARTLRDVPH RLTPSDEFPI PAVLEVRGEV 
FFRLADFEEL NAGLVAEGKP PFANPRNSAA GSLRQKNPQI TSRRKLGMIC HGLGRIEGGW 
SPASLHEAYR ALAAWGLPVS AHTKQVVGAD AVVDRVFYWG EHRHDPEHEI DGLVVKVDEI 
ALQRRLGATS RAPRWAIAYK YPPEEVTTKL LDIRVNVGRT GRVTPYAYMA PVTVAGSTVE 
FATLHNASEV QRKGVLIGDT VTIRKAGDVI PEVLGPVVDL RDGTEKAFVM PVTCPECGAA 
LAPSKEGDAD IRCPNTETCP AQLRERLFYL AGRTCFDIEG LGYEAATALT ASPVLHNEGD 
VFSLTEADLT QVPLFTNDGG ALSANAQRLL TNLDVAKTKP LWRVLVALSI RHVGPSAARA 
LAQELGSLEA IAAADVDQLA EVDGVGRVIA EAVVEWFTVG WHREIVEKWR AAGVTMEDER 
DASVPRNLEG LSIVVTGSLQ NFSRDGAKEA ILVRGGKAAS SVSKKTAFVV VGDAPGSKAD 
KAEQLGVPVL DEAGFEKLLA EGPEAFAH