| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_2667 |
|---|
| Symbol | |
|---|
| ID | 9156828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 2771901 |
|---|
| End bp | 2773460 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | carotene biosynthesis associated membrane protein |
|---|
| Protein accession | YP_003647606 |
|---|
| Protein GI | 296140363 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGTT CACTGAATCC CGTCCGCGCC GAGCGCGATG CCGGGGCCGC CCGCGCGGCC
GCCGGTGATG CGCTGCGCGG CTACGCCGCT TTCGTGCGGT CCAGTACCGG CCGCCCGGCC
CTGCTGGGCC TGCTCGGGGC GGCCCTGACC ACACTCGGCA GTTTCGGTGC CGGCGCTATC
CGCGTGCACG ATGTGACACT CGAGTCCGCG CACCTGTCGT GGCTGCGGTA CGGCCACGGC
CTGGTGCTGA GTTCCGTGCT GTTCTGGACC GGTATCGCCC TGCTGATGCT CGCGTGGGTC
CGCCTGGGGC GCAGTGCTCT CCGGGACGAG GTCACCGCGA GACAGGTGGC GGGCACGGTC
GCACTGTGGG TGGCACCGCT GATCGTGGCG GTGCCGCTGT ACTCCCGCGA CGCGTACAGC
TATCTCGCGC AGGGCGCACT GCTGCGCGAC GGCTACGACC CGTACGAGGT GGGCCCCGTC
GTCAACCCGA ACGGACTCCT CGACGATGTG AGCGGTATCT GGACCACCAC CACGGCGCCG
TACGGTCCGC TGTTCATCCT GATCGCCAAG TGGGTCACGG TGATCTGCGG CGACAACGCG
CTCACCGGAA CGATCGCCCT GCGGCTGGTG ATGCTTCCGG GCATCGCGCT GTCGGTGTGG
GGCGTCGCGC GATTGGCGCA GCACTTCCGC GCGCGGCCGG CCGTCTCCCT CTGGTTCGCC
GTGCTCAACC CGCTCGTGGT GGTGCACCTC GTGGGCGGCG TGCACAACGA GGCACTGATG
GTGGGGCTCA TGGTCGCCGG CCTGGTGCTG GTGCTGCGCC GCAAGCACTG GTTCGGTGTG
GCCGTGATCG TGGCCGCGGT GGCGGTCAAG GGCACTGCCG CGATCGCCCT GCCCTTCGTG
GTGTGGATCT GGTACCACCA CCGTCGCGAG GCGGATCCGT CGGAATCGTC GCCGCGCGCA
TTCCTCATCG TGGGTGCCTC ATCGGTCGCG ATCTTCGCGG CTCTGTTCGC TGCGTTCACA
CTGATCGCGG GCGTCGGCCT GGGCTGGGTC ACCGCGCTCG CCGGGTCGAT CAAGATCATC
AACTACATCA CGCTGCCGAC CGCCCTCGCC CAGCTCACCG CGCTGCTGGC GTCCCCGTTC
ACCGGGTTGC ACCTGGCACC GATCCTGGTG GTCACCCGCG CGCTGGGCAT CGTCGCGCTC
GCGATCACCC TGGTGGTGCT GTGGTGGCGG TACCGGCAGA ACGAGCGGCG CAATGTGATG
GGAATCCTGC TGGGGCTGCT CGCGGTCTGC GTGCTGTCTC CCGCCTCGCT GCCCTGGTAC
TACACCTGGC CGCTCGCGGT GGCCGGTGCG TTCACCTGGT CGCGCCGGAC CCTTGCGATC
ATCGTCGGGC TCTCGGTGTG GCTGATGGCG GTGTTCATGC CCACCGGCTC CATCGGCTTG
TACTCGTGGT GGAACGTGCT GCTCGCGATC GCATTGGGTG CGCTCGCCGG CTACTCACTG
CTCCATCCGG ACCCGCTGCG GGTGCGGCCG AAGCTGGGCC TGGAACCGGT CCCTGCCTGA
|
|---|
| Protein sequence | MSGSLNPVRA ERDAGAARAA AGDALRGYAA FVRSSTGRPA LLGLLGAALT TLGSFGAGAI
RVHDVTLESA HLSWLRYGHG LVLSSVLFWT GIALLMLAWV RLGRSALRDE VTARQVAGTV
ALWVAPLIVA VPLYSRDAYS YLAQGALLRD GYDPYEVGPV VNPNGLLDDV SGIWTTTTAP
YGPLFILIAK WVTVICGDNA LTGTIALRLV MLPGIALSVW GVARLAQHFR ARPAVSLWFA
VLNPLVVVHL VGGVHNEALM VGLMVAGLVL VLRRKHWFGV AVIVAAVAVK GTAAIALPFV
VWIWYHHRRE ADPSESSPRA FLIVGASSVA IFAALFAAFT LIAGVGLGWV TALAGSIKII
NYITLPTALA QLTALLASPF TGLHLAPILV VTRALGIVAL AITLVVLWWR YRQNERRNVM
GILLGLLAVC VLSPASLPWY YTWPLAVAGA FTWSRRTLAI IVGLSVWLMA VFMPTGSIGL
YSWWNVLLAI ALGALAGYSL LHPDPLRVRP KLGLEPVPA
|
|---|
| |