| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_2224 |
|---|
| Symbol | |
|---|
| ID | 9156380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 2315757 |
|---|
| End bp | 2316665 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | low-density lipoprotein receptor YWTD repeat protein |
|---|
| Protein accession | YP_003647172 |
|---|
| Protein GI | 296139929 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG CCAAGCTGTA CGTCCTCCAG ATCCGTCCGC GTGCCGAGAT CATCGAACTG
GCACCCGACG GGTCGGGCGT ACGTACCGTC GCCGATGTCA CCGGGTACTT TCCCGACGGC
ATCGTGGTCG ACGAATCCAC CTCGTCGATC CTGTGGACAC ATATGGGCAC CCCGACCGAC
GTTCCCAAGG GCGAGTTCTT CGAGATGGAC GGCGCGATAT TTCGCACGTC CGCGCAGGGG
AGTACCGAGC CGCTCATCGG ATGGGGCCAG ATCGTGACGC CGAAGCAGCT GACGGGCGAC
TTCGAGCGCG GTCATCTGTA CTGGGGCGAT CGCGAGGGCA TGCGCCTGAT GCGGTCGGGG
CTCGACGGTG CGAACGTGAC AGTGCTCGTG CGCACCGGTG TCTTTCCCAG GGACTCCGCG
GATGCGGCTC TGCATTGCGT CGGCGTCACC GTCGATCACC GCAACGACCG GGTCTTCTGG
ACGCAGAAGG GCGCGCCGGA CAGCGGCACG GGACGCATCT TCACCGCCGG TATCGACCTG
CCCACCGGTG CGACACCTGA CGATCGCGGA GACATCACCG TCGTGGCTGC GGACCTACCC
GAGCCGATCG ACCTCGAGTA CGACGACGCC GAGAACGCTC TCTACTGGAC CGACCGAGGT
GACCTCCCGG AAGGAAATTC GCTGAATCGC ATCCGGTTCG ACGGAGCCAC GGCCGGACCG
AAAGAGGTAC TCGCGACGGG ACTTCAGGAA GGGATCGGCC TAGCGCTCGA CCGGGAGGGG
CGGCGAGCCT TCGTCAGCGA TTTGGCAGGC AACATCCTCG CGGTGAATCT CGACGGTGCA
CACGATGCCC GGGTGATCGC GAAGCTCGGG ATGCTCACCG GCATCGCTTA CGCCGCAGCG
GTGCGATAA
|
|---|
| Protein sequence | MTDAKLYVLQ IRPRAEIIEL APDGSGVRTV ADVTGYFPDG IVVDESTSSI LWTHMGTPTD
VPKGEFFEMD GAIFRTSAQG STEPLIGWGQ IVTPKQLTGD FERGHLYWGD REGMRLMRSG
LDGANVTVLV RTGVFPRDSA DAALHCVGVT VDHRNDRVFW TQKGAPDSGT GRIFTAGIDL
PTGATPDDRG DITVVAADLP EPIDLEYDDA ENALYWTDRG DLPEGNSLNR IRFDGATAGP
KEVLATGLQE GIGLALDREG RRAFVSDLAG NILAVNLDGA HDARVIAKLG MLTGIAYAAA
VR
|
|---|
| |