Gene Tpau_1940 details

Gene Information

• Locus tag: Tpau_1940
• ID: 9156095
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 2024531
• End bp: 2026651
• Gene Length: 2121 bp
• Protein Length: 706 aa
• Translation table: 11
• GC content: 72%
• Product: DEAD/DEAH box helicase domain protein
• Protein accession: YP_003646892
• Protein GI: 296139649

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.187923
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGGAGC AGGACCATGC CGTGCTGAGC GGTGCGCGCG CCCAGCGGGC CCGCGCGGTG 
ATCGAGGCGC TCGCCGGGCC CGGTGCCGCG CTCCGTGCCG ACCAGGAGAC CGCCGTCGCA 
TCACTGCTCG AACCGGCTGC ACGGGTGCTC GTGGTGCAGG CCACCGGATG GGGCAAGTCG 
GCGGTGTACT GGGTAGCCAC CGCGCTGCGG CGCGCGGAAG GAGCCGGTCC CGCCCTGATC 
GTGTCACCAC TGCTGTCCCT CATGCGCGAT CAGGTCGCCG CTGCCGAGCG AGCCGGACTG 
CGTGCCGCCA CGCTCAACTC GTCGAACTTC GAGGAGTGGG GCGCCATCGA AGCGCGGCTC 
GCGGCCGGCG AGATCGACGT ACTCCTCGTT TCACCCGAGC GCCTGGCCAA TCCGTCGTTC 
GGACGCCGCG TCCTGGCGGC GCTTGAGGGG AAGCTCGGGC TCCTCGTGAT CGACGAGGCG 
CACGCCGTCT CCGACTGGGG CCACGACTTC CGCCCGGACT ATCGGCGCGT GTCGGACGTG 
CTGACGCGGC TGCACCCGGC GACCCCGGTT CTCGCTACCA CCGCGACCGC GAATGCCCGC 
GTCACCGCCG ACGTCGCGGC GCAGTTGGGC GACGCCACAC TGGTGTTGCG CGGCCCGCTC 
GCCCGGCGCT CCCTGCAACT GAACGTGCTC CCCACACTGG CCCCGATCAC TCGCTACGCG 
TGGGTCGCCC GGCACCTGCC CGATCTCCCC GGATCGGGAA TCGTGTACGC GCTCACCGTG 
TCCGACGCCG AACGCCTCGT CGACGGGATC CGGGCGGTGC ACGGCGCCGA CTACCCGGTG 
GCCGCCTACA CCGGAAAGCT GGACCCGGAC ACCCGGGAGC GCCTCGAAGA TGCGCTGCGC 
GCCAACGAGA TCAAGGCGCT CATCGCGACA TCGGCGCTCG GGATGGGCTT CGACAAGCCC 
GATCTCGGTT TCGTGGTGCA CGTGGGCTCG CCGCCGTCGC CCGTGTCGTA CTACCAGCAG 
GTCGGTCGTG CCGGGCGCGC CATCGACCAC GCCGTCGTCG CGCTGCTCCC GTCCGAGTCG 
GATGCCGGCG TGTGGGACTA CTTCGCGACC GCCACGATTC CAGATCCCGA GCAGATGGCG 
ACGGTGCTCA CCGCTCTCGG GGACGACGAG ACGGGCGAGG GCCTCTCGGC CATCGCGCTC 
GAAGCGGGCA CCGGACTGCG GCGTACCCGG ATCGACCTCA TGCTCAAGCA GCTCGCCGTC 
GACGGTGCCG TCGAGCGCGT CGAGGGGGGA TACCGGCTGA CCGGAGCGAA CTGGCATTAC 
GACGGCGCGC ATTACGACGG CATCGTGGCC ACCCGGCGCC GCGAGGCCGA CATCATGCGC 
GCCTACACCC GTGGTGAACG CTGTCTCATG CAGTTGCTCA CCGAGTCGCT CGACGACCCC 
GAAGCCGCGC CCTGCGGCCG CTGCTCCGTC TGCCTCGGCC ACGTCCCCGA CGGATTGGGG 
CAGGAGCCGC CACCCGAGAC CGCCCGGCTG GTCGGCGGCG CCCTGCGTGC GCAGAGCCAG 
GTGCTCGATC CGCGAAAAAT GTGGCCCGGC GGAGTATCGG GTCGCAAGGG ACGCATCGCC 
CCCGATGTCG CCGCCGAACC CGGCCGGGTG ATCGTGTTCG CCGACGCGCC CGAATGGACC 
GGCACGATTG CCGCAGCCCG GTCGGGCGAT TCCCACGCCG TGTCCGACCT CGCGGACGCC 
GCCGTCGCCA CCTTGTCCCG CTGGCGTCAG CAGTGGCGCG CCCGCCCCGA CGTGGTGGTG 
TCGCTGCAGG TCACTGATCG GTCTCAGCCG GTGGAGCCGG TCGCCGACCG TATCGCCGAG 
ATCGGCAGGC TGGATCGGAT CACATTGCCC GTACCGCGCG GCCCGGCCCC CGGCCGTGAT 
GCGTCCGGCG CCCAGGAGGC CGCGCACTGG CTCGACACGA TCACGGTCGA CGATGCCTCC 
GCCTCGGCGG TCCGTGCTCG CGCGGTGCTG CTCGTCGTGG ACTCCACGTC CACCGGGTGG 
GCCGTCACGA TCGCAGCGGC CCGGTTGCGC GAGGCCGGTG CCGCATGCGT GCTGCCGCTG 
GTCCTGCACC GTCCGGCCTG A 

 

Protein sequence

MSEQDHAVLS GARAQRARAV IEALAGPGAA LRADQETAVA SLLEPAARVL VVQATGWGKS 
AVYWVATALR RAEGAGPALI VSPLLSLMRD QVAAAERAGL RAATLNSSNF EEWGAIEARL 
AAGEIDVLLV SPERLANPSF GRRVLAALEG KLGLLVIDEA HAVSDWGHDF RPDYRRVSDV 
LTRLHPATPV LATTATANAR VTADVAAQLG DATLVLRGPL ARRSLQLNVL PTLAPITRYA 
WVARHLPDLP GSGIVYALTV SDAERLVDGI RAVHGADYPV AAYTGKLDPD TRERLEDALR 
ANEIKALIAT SALGMGFDKP DLGFVVHVGS PPSPVSYYQQ VGRAGRAIDH AVVALLPSES 
DAGVWDYFAT ATIPDPEQMA TVLTALGDDE TGEGLSAIAL EAGTGLRRTR IDLMLKQLAV 
DGAVERVEGG YRLTGANWHY DGAHYDGIVA TRRREADIMR AYTRGERCLM QLLTESLDDP 
EAAPCGRCSV CLGHVPDGLG QEPPPETARL VGGALRAQSQ VLDPRKMWPG GVSGRKGRIA 
PDVAAEPGRV IVFADAPEWT GTIAAARSGD SHAVSDLADA AVATLSRWRQ QWRARPDVVV 
SLQVTDRSQP VEPVADRIAE IGRLDRITLP VPRGPAPGRD ASGAQEAAHW LDTITVDDAS 
ASAVRARAVL LVVDSTSTGW AVTIAAARLR EAGAACVLPL VLHRPA