| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_1834 |
|---|
| Symbol | |
|---|
| ID | 9155984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | - |
|---|
| Start bp | 1917851 |
|---|
| End bp | 1918843 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
|---|
| Protein accession | YP_003646791 |
|---|
| Protein GI | 296139548 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.918452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACACC GCTTCAGCAC CACAGCCCCC GCAGCCGAGC GTGTCCGGCC CGAGTTGACG
GAGGCCGATC TCGACGCTCA GAGCCCCGCA GCAGATCTGG TGCGGGTGTA CCTGAACGGC
ATCGGCCGCA CCGCCCTGCT CACCGCGGAG GACGAGGTCG AATTGGCCAA GCGCATCGAG
GCGGGGCTCT ACGCCCAGCA CCTGCTCGAT ACCAAGAAGC GGCTGTCGGC GTCGAAGAAG
CGTGATCTGG CGTTCATCGT GCGCGACGGC CAGGCGGCCC GGCAGCACCT GCTGGAAGCC
AACCTGCGCC TGGTGGTGTC GTTGGCCAAG CGCTACACCG GCCGCGGCAT GCCGCTGCTG
GACCTGATCC AGGAGGGCAA CCTCGGACTC ATCCGCGCGA TGGAGAAGTT CGACTACGCC
AAGGGATTCA AGTTCTCGAC CTACGCCACC TGGTGGATCC GGCAGGCCAT CACCCGCGGT
ATGGCCGACC AGTCGCGCAC CATCCGGCTC CCCGTCCATC TCGTCGAGCA GGTCAACAAG
CTGGCCCGCA TCCGCCGTGA GCTGCATCAG CAGCTGGGCC GCGAAGCCAC GGACGCCGAA
CTGGCCGCCG AGTCCGGCAT TCCGGCGGAG AAGATCGCCG ACCTGATGGA CCACTCGCGC
GACCCGGTGA GCCTGGACAT GCCCGTCGGC TCGGACGAAG AGGCCCCGCT GGGCGACTTC
ATCGAGGATG CAGAGGCCGC GTCGGCCGAG TCCGCGGTGA TCTCCACGCT CATGCACAGC
GACGTCCGGT CGGTGCTCGC CACCCTGGAC GAGCGGGAGC AGCAGGTGAT CCGGCTGCGG
TACGGTCTCG ACGACGGTCA GCCGCGCACC CTCGACCAGA TCGGCAAGCT GTTCGGCCTG
TCCCGTGAGC GGGTGCGCCA GATCGAGCGC GAGGTCATGA GCAAGCTCCG CAACGGCGAG
CGCGCCGACC GGTTGCGCGC CTACGCCAGC TAA
|
|---|
| Protein sequence | MAHRFSTTAP AAERVRPELT EADLDAQSPA ADLVRVYLNG IGRTALLTAE DEVELAKRIE
AGLYAQHLLD TKKRLSASKK RDLAFIVRDG QAARQHLLEA NLRLVVSLAK RYTGRGMPLL
DLIQEGNLGL IRAMEKFDYA KGFKFSTYAT WWIRQAITRG MADQSRTIRL PVHLVEQVNK
LARIRRELHQ QLGREATDAE LAAESGIPAE KIADLMDHSR DPVSLDMPVG SDEEAPLGDF
IEDAEAASAE SAVISTLMHS DVRSVLATLD EREQQVIRLR YGLDDGQPRT LDQIGKLFGL
SRERVRQIER EVMSKLRNGE RADRLRAYAS
|
|---|
| |