| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_1704 |
|---|
| Symbol | |
|---|
| ID | 9155854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 1775450 |
|---|
| End bp | 1777723 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003646661 |
|---|
| Protein GI | 296139418 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCCG GAGCCCCGGC GCAGACGTAC CGCGTCAAGG GCAGCGCTCT CGGAGTCGCC
ATCGTGGTCC TGTCCGGCAT GATGTTCCTC GCTGTCCTGG ACGGCACCGT GGTCTTCATC
GCGATGCCGA GCATCCAGGA TGCGATGCAT CTGTCCGACG CCGCGAAGAT CTGGGTGTTC
GGCGCCTACG TCCTCACCTT CGGCGGATTC ATGCTGTTGG GCGGGCGGCT CGGCGACACG
TTCGGCCGAA AACGGATGTT CATCGTCGGC GTGGCCGGGT TCACCCTCGC CTCGCTGCTG
ACCGGCTTCG CCAGCAACGA GGTGTGGCTG CTGGCCGCGC GCGCGGGCCA GGGCCTGTTC
GCCGCCATCG CGTGCCCCAC TGCGCTGGCC CTCATCGCGA CCACCTTCGC GCCCGGCAAG
GCACGCAACC AGGCGTTCGC GATCTTCGGT GCGATGGCGG GGCTCGGATC GGTCGCGGGC
CTGGTGGCGG GTGGCCTGCT GGCCACGATC GACTGGCGAC TGGTGTTCTG GATCAACATC
CCGGTCGGCG TCGTCTGCGT GATCGGCGCG ATCGTCGCGC TCGAGGAGTC CACCGCCGAG
CGTCGTCACT CGCTCGACGT CAAGGGGGCG TTCCTCGCGG TCACCGGCTG CGTCGCCGGC
GTCTACGCCC TGACCATGGG GCCCGAGGTG CACTGGCAGA GCCCGTCGGT CTACATCGCC
GCCGTCGTGT GCGTCGTCTC CCTCGCTGTG TTCTTGCAGG TCGAGCGCAC TGCGAAGAAC
CCGATCCTGC CGTTCTCGCT GTTCCGCAAC AAGAACCGAG TCGCCGCGAT GATCGCCATC
CTGGTGTGCG GCGCACTGAT CCCCACGCTG GGCTTCTACG TGGCGCTCAC CTTCCAGCAG
GTGCTCGGCT ACACCCCGCT CGAATCCGGT CTCGCGCTCG TGCCCTTCGC GGTGGGTATG
GGTATCTCGG CCCCGATCTC CAGCCAGCTG GCGCTGAAAT TCCAGGCCCG CTGGCTCGTG
GCGATCGGCG GCCTCATCGT CTTCCTTCCC TGCCTCTACG TGCCGACCCT CATGACGAGG
GACCCGTCGA CGGTCAGCTA CTTCCCGTAC ATCGGGATTC CGGTGTTCAT CATCGGCCTC
GGCGTCGGGC TCGCGATCGT GCCGCTGCCC ATCTGTGCGC TCGCGGGCGT GCGTCCCTCC
GAGACCGGTC CGATGTCGGC GCTGGTCGAG GTGTGCCAGA ACCTGGGCGG CATCATCGGC
CTCGCGTCCG TCCAGGTGCT CGTGACCTCG CGCATCATGA AGGAGGGCGG CCCGACCACC
GGCGAGATCA GCCACGACGC ATTGTCCGAG GCGCAGCGGC ACGCGCTCGC CTCCGGTTAC
GGCCTCGCCT TCATCGCGTG CGCCGCGATC CTGATCCTGG CCGGCCTGGT CGTGGTGCCG
TTCATGCGGT TCACCCCCGA CGAAGTCGCC GAGGGGCAGG CGGCTCAGGA GTCCAACAAG
TCCGGTGGTT CCATCCCGTC GACCTCGTTC CCGGCGCAGG CCTTCGAGGA CGACGATGTG
GACGACGACT GGGAGCCGCT GGAGGGCGAT GTCACCTCCG GTTCGTTCGC GGCGATCCGG
CGCGAAGACT TCGATCGCGC CTACAACGAG CAGCCCGGCG ACCCCGAGCC GGTGTACTTC
ACCGACCGGT TCCGTGCGAT CAAACGCCCG CATGAGCCGC AGCCGCCCAC CCGGAACGTG
CCCGTCGCGC CCCCGCAGCG CCCCGTCGCT CCGACCGGGC CGCAGCAGGC GTACTCGCAC
CCCAGCGATC CGCTGCCGCG CCGCACCTCG CAGCCCGGCG ACGATCTCGC CGGCGTCGCG
CGACCGTCCG GCCCGATCCG CCGGGAGAGT GCAGACCTGC AGCGGCCCGC CGTGCCCCCG
CAGCCCGCAC GGCCACCGGC AGCGCGGCCC GCCCCGAGCG CGCAGTACCC CGTGCAACCG
TCGCAGCGCC CCGTCGGTCC GCGCGCGAGC CAGCCGATCC GCCGGCCCGG ACCGCCGCCC
CAGCATCCGA GCGCACCGAT GCAGCGCCCC AGCGGCGAGC TCCGCCCGAG TGGCCCGATG
CAGCGGCCCA GCGCGCCGAT CCCGCGTCCG CACGAGTCGC AGTTCGTTCC CCCGGCCCCG
CCGCGCACCG GCGGACGGCA CGCGATGCCC GACGACGATA TGCATCATCC GGCACCATCG
GCCCAGGCCG AGCGTGTCAG CCGCGGTCGC CGGCACCGCC GCGATGAGGG TTGA
|
|---|
| Protein sequence | MAPGAPAQTY RVKGSALGVA IVVLSGMMFL AVLDGTVVFI AMPSIQDAMH LSDAAKIWVF
GAYVLTFGGF MLLGGRLGDT FGRKRMFIVG VAGFTLASLL TGFASNEVWL LAARAGQGLF
AAIACPTALA LIATTFAPGK ARNQAFAIFG AMAGLGSVAG LVAGGLLATI DWRLVFWINI
PVGVVCVIGA IVALEESTAE RRHSLDVKGA FLAVTGCVAG VYALTMGPEV HWQSPSVYIA
AVVCVVSLAV FLQVERTAKN PILPFSLFRN KNRVAAMIAI LVCGALIPTL GFYVALTFQQ
VLGYTPLESG LALVPFAVGM GISAPISSQL ALKFQARWLV AIGGLIVFLP CLYVPTLMTR
DPSTVSYFPY IGIPVFIIGL GVGLAIVPLP ICALAGVRPS ETGPMSALVE VCQNLGGIIG
LASVQVLVTS RIMKEGGPTT GEISHDALSE AQRHALASGY GLAFIACAAI LILAGLVVVP
FMRFTPDEVA EGQAAQESNK SGGSIPSTSF PAQAFEDDDV DDDWEPLEGD VTSGSFAAIR
REDFDRAYNE QPGDPEPVYF TDRFRAIKRP HEPQPPTRNV PVAPPQRPVA PTGPQQAYSH
PSDPLPRRTS QPGDDLAGVA RPSGPIRRES ADLQRPAVPP QPARPPAARP APSAQYPVQP
SQRPVGPRAS QPIRRPGPPP QHPSAPMQRP SGELRPSGPM QRPSAPIPRP HESQFVPPAP
PRTGGRHAMP DDDMHHPAPS AQAERVSRGR RHRRDEG
|
|---|
| |