| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_1684 |
|---|
| Symbol | |
|---|
| ID | 9155834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 1754553 |
|---|
| End bp | 1755704 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| Protein accession | YP_003646642 |
|---|
| Protein GI | 296139399 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.032502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTAG GTTTGGGAAT GCCGGCAGCC CCGGCCCCGA CGCTCGCCCC TCGTCGCACG
ACCCGCCAGC TCAACGTGGG TGGCGTCGGT GTCGGCAGCG ACAGCCCGAT CTCGGTGCAG
TCGATGTGCA CCACCAAGAC TCACGACGTG AACGCCACGC TGCAGCAGAT CGCGGAGCTC
ACCGCATCGG GCTGCGATAT CGTGCGCGTC GCCTGCCCGC GGCAGGAGGA CGCCGACGCG
TTGCCGATCA TCGCGAAGAA GGCGAACATC CCGGTGATCG CCGATATCCA CTTCCAGCCC
AAGTACATCT TCGCCGCGAT CGACGCCGGC TGTGCCGCTG TGCGGGTGAA CCCGGGCAAC
ATCAAGGAGT TCGACGGCCG CGTCAAGGAG GTCGCGAAGG CCGCCGGTGA CGCGGGCATC
CCGATTCGCA TCGGCGTCAA CGCCGGCTCG CTCGACAAGC GGATGATGGA GAAGTACGGC
AAGGCCACCC CGGAGGCGCT CGTGGAGTCC GCTCTCTGGG AAGCGAGCCT GTTCGAGGAG
CACGGTTTCG GCGATATCAA GATCTCCGTC AAGCACAACG ATCCGGTGAT CATGGTGGAG
GCATACCGGC AGCTCGCCGC GCAGTGCGAT TACCCGCTGC ACCTCGGCGT CACCGAGGCC
GGCCCCGCCT TCCAGGGCAC CATCAAGAGC TCCGTCGCCT TCGGCGCCCT GCTCGCCGAG
GGTATCGGCG ACACCATCCG GGTCTCGCTG TCCGCGCCGC CGGCCGAGGA GATCAAGGTG
GGGGATGCGA TTCTGCAGTC GCTGAACCTG CGGCCCCGCA AGCTGGAGAT CGTCTCCTGT
CCGTCGTGCG GCCGGGCGCA GGTCGATGTC TACAAGCTGG CCAACGAGGT GACCGCCGGC
CTCGAGGGCA TGGAGGTGCC GCTGCGCGTG GCCGTCATGG GTTGCGTGGT CAACGGTCCC
GGCGAGGCCC GTGAGGCCGA CCTCGGCGTG GCCTCCGGCA ACGGCAAGGG CCAGATCTTC
GTCAAGGGTG AGGTGATCAA GACCGTCCCC GAGGCGCAGA TCGTGGAGAC CCTGATCGAG
GAAGCGCTGC GGATCGCCGA GGAATCGGGG GATAGTGAGG GGACCGGTGC CCCTGTGGTC
ACCGTGTCGT AG
|
|---|
| Protein sequence | MSVGLGMPAA PAPTLAPRRT TRQLNVGGVG VGSDSPISVQ SMCTTKTHDV NATLQQIAEL
TASGCDIVRV ACPRQEDADA LPIIAKKANI PVIADIHFQP KYIFAAIDAG CAAVRVNPGN
IKEFDGRVKE VAKAAGDAGI PIRIGVNAGS LDKRMMEKYG KATPEALVES ALWEASLFEE
HGFGDIKISV KHNDPVIMVE AYRQLAAQCD YPLHLGVTEA GPAFQGTIKS SVAFGALLAE
GIGDTIRVSL SAPPAEEIKV GDAILQSLNL RPRKLEIVSC PSCGRAQVDV YKLANEVTAG
LEGMEVPLRV AVMGCVVNGP GEAREADLGV ASGNGKGQIF VKGEVIKTVP EAQIVETLIE
EALRIAEESG DSEGTGAPVV TVS
|
|---|
| |