| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_1481 |
|---|
| Symbol | |
|---|
| ID | 9155631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | - |
|---|
| Start bp | 1547856 |
|---|
| End bp | 1550069 |
|---|
| Gene Length | 2214 bp |
|---|
| Protein Length | 737 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | glycoside hydrolase family 3 domain protein |
|---|
| Protein accession | YP_003646447 |
|---|
| Protein GI | 296139204 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATG CCGCCGATCT TCCGCTCGCC GACCGCGCCC GGCTGCTGAC CGGGGCCGAC
TTCTGGACCA CCGCGGCGGT ACCGGAGGCG GGCATCGACG CGCTCGTCCT CACCGATGGT
CCGCATGGTG TGCGCAGGCA ACTCGGGTCG TCCGATCACT TGGGACTCAA CGCCGCGGCG
CCCGCCACCT GTTTCCCACC CGCGGTCGCC GTGGGGTCGA GCTGGAACCC CGAGCTCGCC
CATCGGATCG GTGCCGCGAT CGCCGCGGAG GCGCGTGCTC TCGGCGTGAC CATCGCCCTC
GGACCGGGAG TCAATATCAA GCGGCACCCC CTGTGCGGCA GAAACTTCGA GTACTACGCG
GAAGATCCTC TCCTCGCCGG TGTCCTCGGA GCCGCCCATG TGTCCGGGCA GCAGGCCGCG
GGCACCGGGG CCAGCGTCAA ACACTTCGCG GTCAACAACC AGGAAACCGA GCGGATGCGG
ATCAGCGTCG ACGTGGACGC GCGCACACTC CGGGAGATCT ACCTGCCCGC GTTCGAGCGG
ATCGTCAAAC AGGCCGGCCC GGCCACGGTG ATGTGCTCAT ACAACCGGAT CGCCGGCACC
TACGCATCCG AGAACCACTG GCTTCTCACG GAGTTGCTGC GCGATGAATG GGACTTCCGC
GGCCTCATCG TCTCCGATTG GGGCGCCGTG CACGACCGGG TGGCCGCCCT CCGCGCAGGA
CTGGATCTGG AGATGCCGCA CGCGCCGCGC AGCGCCGGCC AGGTTCGCGG CGCCGTCGAA
TCCGGCGACC TGGACGAGGA CATCGTCACG ACGGCGGCGC AGCGCGTGCT CGACCTCGCG
GCGTTCGCAC CGTCGGACGC GGAGCCGGAA CCCGATCTGC GGGCCCACCA CGAGCTCGCT
CGCGAAGCAG CCGCGGAGTG CGCCGTGCTG CTCCGCAACG AACACGAGGT ACTGCCCCTG
CACGCCGGCT CCGGACGGAT CGCGGTGATC GGCGAGCTGG CGCGGACCCC GCGCTACCAA
GGTGGCGGGT CGAGTCACAT CAATGCGAGC ACGGTCGACA TCCCGCTCGA CGAGATCGTC
TCCCGGGCAA CGAGTGCCGG TATCAGTGCC GAGTTCGCGC CAGGCTACGG CCTGGACCAC
GATGATCCCG GACTGCGCGC GCAGGCGCAG GCCCTTGCCG CCCGGTCCGA TGTCGCCGTG
GTCTTCGCCG GGCTCACCGA GGCCGAGGAG TCGGAGGGTT TCGATCGTGC CCACCTCGGG
ATCGCATCGC AGCAGGTCGC CCTGCTGCGC GCCGTGGCGG CAGCCGCCCC GCGCACCGTC
GTGGTCCTCG TCGGCGGCGG CGTCGTCGAC CTCGAACCCT GGCACGACGA GGTGGACGCG
ATCCTTGAGG CCTTCCTGCT CGGGCAGGGC GGCGGCGCCG CGATCGCCGA CCTGCTGTTC
GGTGTCGCGG CCCCCTCGGG ACGCCTGGCC GAGACCATCC CCCGCCGGCT GGAGGACACA
CCTGCGTTCG GGAACTTCCC GGGTGAGGCC GGCACCGTGC GGTACGGGGA GGGCCTACTG
GTGGGGTACC GCTGGTACGT CACCCGCGCG ATCGCACCCC GGTATCCGTT CGGCCACGGC
CTCGGGTACA CGAGCTTCGC CACCGATTCG CTCGACGTCA CCGCGACCGG CGACGATTCC
GCGGCGGTTC GCGTGACGGT CCGTAACACC GGAGCCCGCG CGGGAAGCCA TGTAGTTCAG
GTCTACATCG GATCGGACGC CGGCGGCGTG TTCCGACCCC GCCGGTCGCT CGCCGCGTTC
CGCAAGGTGG CACTCGCGCC GGGCGAGGCG AGGACCATCG AGTTCACAGT GGGCCGCCGT
GCTTTCGCCC ATTGGGATAC GGTGCGGGAC GCCTGGTCGG TTCCGGGCGG CACCTATCGT
GTGGACGTGG GTCGCAGCAG CCTCGACATC GACTGCGCCA CGGAGGTGGT ACTCGCCGGT
GACGCCCTGG TGACGCATCT GACGCTGGAA TCGACGATCG CCGAATGGGC GGCTCATCCG
GTCGCCGGCG CTCCCTTCCG CACCGCACTG TCCGCGTCCG CCGGCGGACT GCCCGTCGAC
CAGCTCCTCG AACTCGCCGG GTCGATGCCG CTCGGCAAGG CCCTCGACAT GATCCCCGGC
GACGGGGCCG ATCAGGCCCG GGCACAGGTC GAGGCACTGA TCGCGGCGCA ATGA
|
|---|
| Protein sequence | MPDAADLPLA DRARLLTGAD FWTTAAVPEA GIDALVLTDG PHGVRRQLGS SDHLGLNAAA
PATCFPPAVA VGSSWNPELA HRIGAAIAAE ARALGVTIAL GPGVNIKRHP LCGRNFEYYA
EDPLLAGVLG AAHVSGQQAA GTGASVKHFA VNNQETERMR ISVDVDARTL REIYLPAFER
IVKQAGPATV MCSYNRIAGT YASENHWLLT ELLRDEWDFR GLIVSDWGAV HDRVAALRAG
LDLEMPHAPR SAGQVRGAVE SGDLDEDIVT TAAQRVLDLA AFAPSDAEPE PDLRAHHELA
REAAAECAVL LRNEHEVLPL HAGSGRIAVI GELARTPRYQ GGGSSHINAS TVDIPLDEIV
SRATSAGISA EFAPGYGLDH DDPGLRAQAQ ALAARSDVAV VFAGLTEAEE SEGFDRAHLG
IASQQVALLR AVAAAAPRTV VVLVGGGVVD LEPWHDEVDA ILEAFLLGQG GGAAIADLLF
GVAAPSGRLA ETIPRRLEDT PAFGNFPGEA GTVRYGEGLL VGYRWYVTRA IAPRYPFGHG
LGYTSFATDS LDVTATGDDS AAVRVTVRNT GARAGSHVVQ VYIGSDAGGV FRPRRSLAAF
RKVALAPGEA RTIEFTVGRR AFAHWDTVRD AWSVPGGTYR VDVGRSSLDI DCATEVVLAG
DALVTHLTLE STIAEWAAHP VAGAPFRTAL SASAGGLPVD QLLELAGSMP LGKALDMIPG
DGADQARAQV EALIAAQ
|
|---|
| |