| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_1334 |
|---|
| Symbol | |
|---|
| ID | 9155480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 1390008 |
|---|
| End bp | 1391507 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | sodium/proline symporter |
|---|
| Protein accession | YP_003646302 |
|---|
| Protein GI | 296139059 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAGC AGGTCTATCA GACGATCGCA GTGACCCTGT ATTTCGTCGC GATGCTGGGG
ATCGGCTGGT TTGCGTACAG CCGTACCCGG GACAATCTCG ATGACTACAT GCTCGCCGGT
CGCGGTCTCA AACCGTGGGT AGCGGCGCTG AGTGCGGGCG CCTCGGACAT GTCGGGCTGG
CTGCTCATGG GCCTGCCCGG TGCCATCTAC TCCAAGGGGC TGATCGAGGC CTGGATCGCC
ATCGGGCTCA CCGTCGGGGC CTGGCTGAAC TGGAAGTTCG TGGCGCCCCG CCTGCGTTCC
TACACGGAGG TTGCGGGTAA CTCCATCACC ATTCCGAGTT TTCTCGAGCA CCGGCTGCGC
GATTCGTCGC GATCGCTGCG CCTGGTGTGC GGCGTGATCA TCCTCGTCTT CTTCACCTTC
TACGTCTCCA GCGGCATGGT TGCCGCCGGC AAATTCTTCG ACAGCACCTT CGGCGTGTCG
TACGTGCACG GCATGCTGAT CGTCGCCGTG GTCACGATGA TCTACACCCT TTTCGGAGGC
TTCCTCGGCG CCACGCTCAC CGATGTGGCA CAGGGCCTGC TCATGCTCGC GGCCCTCATC
GCCGTTCCGA TCGCCGCGCT GATCCAAGTG GGTGGGATCG GGACCACCGT CGACACCGTG
ACCGCGGTGA ACCCGGACTT CTTCAGCCTC GTGGCCGGCG GATCGGTACT CGGCGTCATT
TCAGCGGCGG CGTGGGGTCT GGGCTACTTC GGACAGCCGC ACATCATCGT CCGGTTCATG
GCGCTGCGGT CGCCGCAGGA GGCCACCACG GCTCGCCGGT TCGGGATCGG TTGGATGGTG
GCCTCCGCGG GTGGCGCGAT CGCCACCGCC GTCGTCGGAC TCGCCTACTT CACCCTGAAT
CCCGAACGCG CGCCGAAGGA CCCGGAAACA GTGTTCCTAC TGTTGTCGCA GATCTTGTTC
CACCCGTTCG TCGCCGGCCT GGTGCTGGCT GCGGTGCTGG CGGCCATCAT GTCCACCGTG
TCCTCGCAAC TGGTGGTGTG CTCCTCCGCG CTGGTCGAAG ACTTGTTCAA GATCTTCGCG
GAGAAGACCG GCCGCGCCGT GGGCATCACC GATAAGACCT ATGTCCGGCT GGGCCGGCTC
GGTGTGCTGC TGGTCGCCGT CGTCGCAGTG ATGCTGGCGA TCGACCCGGC GCAGAGCATC
CTCGACCTGG TCGGGTTCGC CTGGTCCGGA TTCGGCGCCT CGTTCGGCCC GATCGTGATT
CTCGCCCTGT TCTGGCGCAA GCTCACCCAT CAGGGGGCGT TGGCGGGCCT GATCACCGGT
GCGGTGGTCG TCTTCCTGTG GGGCGAGTTC AAGCCCATCG ATCTGTTCGA GATCGTGCCG
GGCTTCCTTG CCAACCTGGT GGTCGCCGTC GGCGTCAGTG TCGCCACCTA CAGGGCCGAC
CAAGCCATCG ACGACGAATT CGAGCGCGCG GCGCGGCTCG CCGAGAAGGC GCCGGCGTGA
|
|---|
| Protein sequence | MSEQVYQTIA VTLYFVAMLG IGWFAYSRTR DNLDDYMLAG RGLKPWVAAL SAGASDMSGW
LLMGLPGAIY SKGLIEAWIA IGLTVGAWLN WKFVAPRLRS YTEVAGNSIT IPSFLEHRLR
DSSRSLRLVC GVIILVFFTF YVSSGMVAAG KFFDSTFGVS YVHGMLIVAV VTMIYTLFGG
FLGATLTDVA QGLLMLAALI AVPIAALIQV GGIGTTVDTV TAVNPDFFSL VAGGSVLGVI
SAAAWGLGYF GQPHIIVRFM ALRSPQEATT ARRFGIGWMV ASAGGAIATA VVGLAYFTLN
PERAPKDPET VFLLLSQILF HPFVAGLVLA AVLAAIMSTV SSQLVVCSSA LVEDLFKIFA
EKTGRAVGIT DKTYVRLGRL GVLLVAVVAV MLAIDPAQSI LDLVGFAWSG FGASFGPIVI
LALFWRKLTH QGALAGLITG AVVVFLWGEF KPIDLFEIVP GFLANLVVAV GVSVATYRAD
QAIDDEFERA ARLAEKAPA
|
|---|
| |