Gene Tpau_1279 details

Gene Information

• Locus tag: Tpau_1279
• ID: 9155423
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: -
• Start bp: 1319317
• End bp: 1321317
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 68%
• Product: alpha amylase catalytic region
• Protein accession: YP_003646248
• Protein GI: 296139005

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0559691
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACAGGGC GCATCGGTAT CGACGACATC GAACCCGTGG TGTCGTGCGG GCAGTACCCG 
AGCAAGGCCG TGGTGGGCGA GGTGGTCCCG GTCTCCGCGA CCGTGTGGCG CGAAGGCCAC 
GACGCGGTCG CCGCCACCGT CGTACTCACC GGCCCCGACG GAACGTCCCG GCCAGTGCGG 
ATGTCCCCCG CGGCCGAACC CGACCGGTTC CACGCACTGG TGCGGCCCGA TCTCACCGGG 
TACTGGTCGC TACGGATCGA AGGCTGGTCG GATCCGATTT CCACGTGGCG CAGCGCGGTC 
GAGAAGAAGC TCGCCGCGGG CCAGGGACCG GCCGAGCTGG CGAATGATCT GGAACTCGGG 
GCGCGGCTGC TCGACCGCGC GGCGGGCGGT GTACCCGAAC TCGCGCGGCC CGCTGTCGCG 
GCCGCCGCGG CGGCGCTGCG CGATACCGAC CGCAGCCTGG TGGAAAGAAC CGGCGCCGCA 
TTGCATCCCG AGATCGCTCG GGTGCTGGAC GAGCATCCGG TGCGGGATCT GGTGACCAAA 
TCGCGGACGG TGCGGATCTG GGTGGACCGC ACACGCGCAC TGTTCGGATC CTGGTACGAG 
CTCTTCCCCC GGTCCACCGG CGGCTGGGAC GGCAACGGGG TCCCGGTGCA CGGGACCTTC 
CACACCGCCG CGGAAGACCT ACCGCGCATC GCCGATATGG GCTTCGACAT CGTCTATCTA 
CCCCCTATCC ATCCGATCGG CACGGTGAAC CGCAAGGGCC GCAACAACAC CCTGACTCCG 
CAGGCGCACG ATGTGGGCTC GCCCTGGGCG ATCGGCGCAG CCTCCGGCGG GCACGACGCG 
GTACATCCGG CGCTGGGCAC ACTGGACGAC TTCGACTACT TCGCGCAGCG TGCCCGCGAT 
CTGGGGATGG AGGTGGCGCT GGACCTGGCG TTCCAGGCCG CACCCGATCA CCCGTGGGCG 
GCGGAGCACC CGGAGTGGTT CACGGTGCTG CCCGACGGCA CGATCGCCTA CGCCGAGAAC 
CCGCCCAAGA AGTATCAGGA CATCTACCCG ATCAACTTCG ACGACGACCG CGTGGGCATC 
TACCGGGAAC TGCTGCGCGT CACGCTGTTC TGGGTGCGGC GTGGAGTGCA GGTGTTCCGG 
GTGGACAATC CGCACACCAA GCCGCCGGAC TTCTGGTTCT GGCTCATCAA CGAGGTGAAG 
AAGGTCGATC GGGACGTGCT CTTCCTGGCG GAGGCGTTCA CTCGGCCAGC GCGGATGTAC 
GGCCTGGCCC AGGCGGGGTT CACCCAGAGC TACACCTACT TCACCTGGCG CACCGCGAAG 
TGGGAGCTCG AGGAGTTCGC CCGCGAACAC GCCGCGAAGG CCGATGTGTG CCGCCCCAAC 
CTCTGGGTGA ACACCCCGGA CATCCTGCAC GAGAGCCTGC AGCACGGCGG CCCGGGCATG 
TTCGCGATCC GCGCCACCCT GGCGTCGACT CTGTCTCCGA GCTGGGGAAT GTACTCCGGC 
TTCGAGCTGT TCGAGCACCA GGCGGTGCGT CCGGGCAGCG AGGAGTACTC GGACTCGGAG 
AAGTACGAGC TGCGCCCGCG CGACTACAAG GCGGCGCAGA GCCGCGGCGA GTCGTTGGAG 
CCGTGGATCA CCCGGCTCAA CGAGATCCGG CGCCGGCATC CCGCGCTGCA GCAACTGCGC 
AACCTGCACT TCCACCACGT CGACAACGAC GCACTGATCG CCTACAGCAA GCACGACGCG 
GTCACCGGCG ACCTGGTGCT GATCGTGGTG AATCTCAACC CCTTCGGCGC CGAATCGGGA 
GTGGTGTGGC TCGACTTGCC CGCGCTCGGG CTCGATTGGC ATGAACGATT CACGGTGCGC 
GATGAGGTGT CGGGAGAGGT GTATCAGTGG GGCCAGGCGA ACTTCGTCCG GTTGGAACCG 
TGGCGCAATG TGGCGCACAT CCTGGCGCTG CCGCAGCTCA GCCCGCAGGC GCGGGAGAAC 
CTTTCGTACC GGGAGGCATG A 

 

Protein sequence

MTGRIGIDDI EPVVSCGQYP SKAVVGEVVP VSATVWREGH DAVAATVVLT GPDGTSRPVR 
MSPAAEPDRF HALVRPDLTG YWSLRIEGWS DPISTWRSAV EKKLAAGQGP AELANDLELG 
ARLLDRAAGG VPELARPAVA AAAAALRDTD RSLVERTGAA LHPEIARVLD EHPVRDLVTK 
SRTVRIWVDR TRALFGSWYE LFPRSTGGWD GNGVPVHGTF HTAAEDLPRI ADMGFDIVYL 
PPIHPIGTVN RKGRNNTLTP QAHDVGSPWA IGAASGGHDA VHPALGTLDD FDYFAQRARD 
LGMEVALDLA FQAAPDHPWA AEHPEWFTVL PDGTIAYAEN PPKKYQDIYP INFDDDRVGI 
YRELLRVTLF WVRRGVQVFR VDNPHTKPPD FWFWLINEVK KVDRDVLFLA EAFTRPARMY 
GLAQAGFTQS YTYFTWRTAK WELEEFAREH AAKADVCRPN LWVNTPDILH ESLQHGGPGM 
FAIRATLAST LSPSWGMYSG FELFEHQAVR PGSEEYSDSE KYELRPRDYK AAQSRGESLE 
PWITRLNEIR RRHPALQQLR NLHFHHVDND ALIAYSKHDA VTGDLVLIVV NLNPFGAESG 
VVWLDLPALG LDWHERFTVR DEVSGEVYQW GQANFVRLEP WRNVAHILAL PQLSPQAREN 
LSYREA