Gene Tpau_1242 details

Gene Information

• Locus tag: Tpau_1242
• ID: 9155383
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: -
• Start bp: 1275365
• End bp: 1277488
• Gene Length: 2124 bp
• Protein Length: 707 aa
• Translation table: 11
• GC content: 65%
• Product: Mammalian cell entry related domain protein
• Protein accession: YP_003646212
• Protein GI: 296138969

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACGCA AAATGAACCT GTTCAACCGT CCGATGCCGA CGGCGACCCA GGAGCGGCGC 
AACCAGCTCA ACTGGGGCAT CTTCGGCGCC GTCGCGACGG CGATCATCCT GCTCATCGCC 
GGATACCTGT TCGTCTTCCA GCCGGGCACC AAGGAGTACT CGGCGGACTT CAAGGAGGCG 
CAGGCGGTAC AGAGCGGCGT GGACGTGCGC GTGGCCGGCA TCAGCGTGGG CAAGGTCTCC 
GACGTCGAGC TCCTCGACGA CCGGGTCCGG GTGAAGTTCC GCGTGGACAA CAACATCTTC 
CTCGGCGACG CCACCACGGT GTCGATGAAG ATGCTCACCA CCGTGGGCGG CTACTACATG 
GCGTTGAGCC CCATGGGCAC CAGCGACCTG GGCAGCAAGC CGATCCCGCC GGAGCGCGTC 
TCGATGCCCT ACAGCCTGTT GGAGACCTTC CAGGCCGCCA CACCGAAGGT CGAAAAGGTG 
CAGGCCACCC CCATTCGGCA GTCGATGAGC CAGCTCAACG AGGCCCTGGA GCAGCAGCCC 
GAGTCCATCC GCAACACCGT CGGCACGTTC AACCGGATGC TCGACAACAT CCTGCGCCAG 
CAGGACCAAG CCGGTGACTT CGTCAAGGTG ATGGCCGAGT ACTCGACCAC CGTGAATCAG 
AACGGCCAGC TGCTGCTGTC CCTCATGCGG AACATGAGCA TGTTCTTCGC CGCGGCCGAG 
GTGAACCTCG CGGGCTTCAA GAGCTACCTG ACCAACACCA CGCAGCTCGT CCAGCGCCTG 
GCCCCGCTGC TGAACGTCTA CCTCAACAAT GTGGATCCGC TGGCGAGCCG GTTCGACGCC 
CTCGTCGCGA AGGCGCGCGA ACTGGTCAAG CAGGCCGAGC CGGCGATCCA GAACGCGAAG 
GACATGCTCG CGAACCTGCA GAAGACGATC TGCACCGGAC GGCACGCTCC AGATCAACCA 
GTCGGAGCAG TCCTTCCTCG CCACGAACGT GTGCATTCCG ACCCCGGGGG TGACCTGCTG 
ATGCGTAAAT TCCTCGCCTC GCGCGGCGCG ATGTCCGCGC TCGTGGTCAT CGTGGCCGTG 
GTCGCCGTGG TCGGTGGCTT CTCCATCAAG AATCTGACCA CGCAGACTCA GGCGTACTGC 
GCGGAACTCG ACAACTCGGT GGGCCTGTAC AAGGGCAACA CGGTGGCCCA GTTCGGCTAC 
CCGATCGGCA AGATCACCGA CATCACCCCG AACGGCGCCA CCACCCGCGT CGACTTCGAG 
ATCCCCGCCG ACCGCAAGCT GCCCACGAAC GTGGGCGTGG TCGCGGTGGC CGACTCGCTC 
GTCGCGCAGC GCCGCATCGA ACTGCTCGAG ACCTACAAGG GCGGGCCCAC GTGGCAGCCC 
GGTAAGTGCA TCACCAACTC CAAGACCCCG CTGTCGATCA CGGAGTCGCT GCAGGCGGTC 
TCGAAGGTGG TCAACGATCT CACCAAGGCC GGCGGCGACG AGGAGTTCAA GAAGGCGATG 
GCGTCCATCC CGGCGCTGAA CAAGGCCACC CAGGGCACCG GACCGGAGAT CTCCGAGGCC 
ACGAACAAGC TGGGTGAACT GATGCGCAAC CCCGGCCCCG GTATGGGCGA TGTGGCAGCC 
ATCCTCGACG CCTTCGCTCC CGCCTCGGAC GGCCTCGTGC AGAACTGGGG CGAGATGCGC 
GAGTTCTTCG CCAAGTACGC GTTCCGGATC AAGAACGTCG GCGAGCCGCT GATGGACACC 
GGTATCGGCG CGTTCCCGCA GCTGGTTCCG CTGCTCAAGA CGCTGTCCAC CATCTTCGAC 
AAGTACGGCG CGTTCATCGC CCCACTGCTG GAGGTCACGG TGCCGGCCAC CACGGTGCTC 
GCGGCGACCA GCAAGCAGTT CGGCGATCTG CTGAACATCC TGCCGCCGCT GATCCGGGCC 
TTCCAGGTCA GCGTCGACAA GAAGACGCTG GCCACCAAGA TCACGTACCG GCCACCGTCA 
AGCCTGGTGC CCTCGAAGAA CCCGGCCCAG ACCTGCAACA ACCTGAACCG GTTCGCGCCG 
GGTCAGTGCA CGGTCGCGGA CCCGGGGCAC GTGAATGTGG ACCTCATCTC CACCGTGCTG 
CGCGGGACGG GAGCGGCGTA CTGA 

 

Protein sequence

MQRKMNLFNR PMPTATQERR NQLNWGIFGA VATAIILLIA GYLFVFQPGT KEYSADFKEA 
QAVQSGVDVR VAGISVGKVS DVELLDDRVR VKFRVDNNIF LGDATTVSMK MLTTVGGYYM 
ALSPMGTSDL GSKPIPPERV SMPYSLLETF QAATPKVEKV QATPIRQSMS QLNEALEQQP 
ESIRNTVGTF NRMLDNILRQ QDQAGDFVKV MAEYSTTVNQ NGQLLLSLMR NMSMFFAAAE 
VNLAGFKSYL TNTTQLVQRL APLLNVYLNN VDPLASRFDA LVAKARELVK QAEPAIQNAK 
DMLANLQKTI CTGRHAPDQP VGAVLPRHER VHSDPGGDLL MRKFLASRGA MSALVVIVAV 
VAVVGGFSIK NLTTQTQAYC AELDNSVGLY KGNTVAQFGY PIGKITDITP NGATTRVDFE 
IPADRKLPTN VGVVAVADSL VAQRRIELLE TYKGGPTWQP GKCITNSKTP LSITESLQAV 
SKVVNDLTKA GGDEEFKKAM ASIPALNKAT QGTGPEISEA TNKLGELMRN PGPGMGDVAA 
ILDAFAPASD GLVQNWGEMR EFFAKYAFRI KNVGEPLMDT GIGAFPQLVP LLKTLSTIFD 
KYGAFIAPLL EVTVPATTVL AATSKQFGDL LNILPPLIRA FQVSVDKKTL ATKITYRPPS 
SLVPSKNPAQ TCNNLNRFAP GQCTVADPGH VNVDLISTVL RGTGAAY