Gene Tpau_1080 details

Gene Information

• Locus tag: Tpau_1080
• ID: 9155220
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 1105638
• End bp: 1106354
• Gene Length: 717 bp
• Protein Length: 238 aa
• Translation table: 11
• GC content: 65%
• Product: sigma 54 modulation protein/ribosomal protein S30EA
• Protein accession: YP_003646051
• Protein GI: 296138808

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCTTC TTTCTTCCCG TGACACCAAC CGCAATGGCG CGAGCACCGT CGAGGTGGAT 
CCGTTCCGCG AACCCAGCCA CATCGCTGAC GAGCGCGACA AGGAGTACCT CACCCCCAAC 
GCCCCCCTGG CCATCGACGG CCGGAACGTG GATGTGCCCG AGCACTTCCG CGTCTACATC 
GGCGATAAGC TGGCGCGCCT CGAGAAGTTC CGCTCCACCA TCACCCTGTT CGAGGTGAGC 
CTGTTCCACG AACCGAACCC GCGGCAGTCC AAGATCTGCC AGCGGCTCGA GCTCACCGTG 
CGCGGCAAGG GCGGCGTCGC CCGGGCCGAG GCCGCGGCCG ACAACTTCTA CGCCGCGTTC 
GAGACCGCCC TCACCAAGGT GCAATCGCGC ATCCGCAAGG CCTCCGATCG CAAGAAGGTG 
CACTACGGCA ATCGCACGCC GGTGTCGGTC TCGGAGGCCA CGGCCCCGTC CGCCCTCCCC 
GACGCATCGT CGGAGACCGA CGACGATCCG TACGCGGCGC TGGTCGAGGA CCACCTCCCC 
GGTCAGGTGG TGCGCATCAA GGACCATCCG GGTACCCCGA TGACGGTCGA TGATGCGCTC 
TATCAGATGG AGTTGGTCGG TCACGACTTC TTCCTGTTCT TCGACAAGGA GACCGAGAAG 
CCGTCCGTGG TGTACCGCCG TAAGGCTTTC GACTACGGCC TCCTCCGCCT GACCTGA 

 

Protein sequence

MTLLSSRDTN RNGASTVEVD PFREPSHIAD ERDKEYLTPN APLAIDGRNV DVPEHFRVYI 
GDKLARLEKF RSTITLFEVS LFHEPNPRQS KICQRLELTV RGKGGVARAE AAADNFYAAF 
ETALTKVQSR IRKASDRKKV HYGNRTPVSV SEATAPSALP DASSETDDDP YAALVEDHLP 
GQVVRIKDHP GTPMTVDDAL YQMELVGHDF FLFFDKETEK PSVVYRRKAF DYGLLRLT