| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_0918 |
|---|
| Symbol | |
|---|
| ID | 9155058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 938260 |
|---|
| End bp | 939762 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003645891 |
|---|
| Protein GI | 296138648 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.171543 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCAGCC CGCTCGGAAT CACCCCTGAC CCTGCGCTTC GCAAGGGACT GCAAACCCGC
CACATCAGCA TGATCGCGCT GGGCGGTGCC ATCGGCACCG GCCTGTTCGT GGCCTCCGGC
AAGACCATCA GTGACGCAGG CCCGGGCGGT GCGCTCGCGG CGTACGCGCT CATGGGCGTG
ATGGTCTTCT TCCTGATGCA GAGCCTTGGC GAGATGTCGG CGTACATGCC GTGCAGCAAC
CCGTTCGAGG AGTACGGCAC CCGGTTCGTC AGCCGGTCCT TCGGCTTCGC CGCCGGATGG
AACTACTGGT TCAACTGGTC GATCACGCTC GCCGCCGAAG TGGTGGCAGC CGGCTTGATC
ATGAAGTTCT GGCTGCCCGA TGTGCCCTCG TGGATCTGGT CGCTGATCTT CATGGTCGGC
CTCCTCGCGT TGAACTTGTT CGCGGTCAAG GCCTTCGGCG AGGCCGAATT CTGGTTCGCC
TCGATCAAGG TGATCGCGGT GGTGGTCTTC CTGATCGTGG GCGTGCTGAT GGTGCTCGGC
GTGATCGGCG GGACGTCGCC CGGATTCTCC AACTGGACCA TCGGTGATGC GCCGTTCGTG
GACTGGCCGC TGGGCATGCT GTCGGTGTTC CTGATCGCCG GGTTCGCCTT CCAGGGGACC
GAGATGATCG CCGTGGCCGC GGGTGAGGCG ATGGAGCCGC GCAGCGCCAT CCCGAAGGCC
GTGCGCACGG TGTTCTTCCG GATCCTGCTG TTCTACATCG GCACGCTCAC GATCATCGGC
TTCCTCATCC CGTACACGAA TCCCGAGCTC CTCAACGGTT CCGAGGACAA CGTGGCGGTG
GCGCCGTTCA CCCTCGTCTT CAAGCTGGCC GGTATCGATG CCGCAGCCTC GATCATGAAC
GCGGTCATCC TGATCGCGAT CCTCTCAGCG GGCAACGCCA GCTTGTACGC GGCGACCCGA
GCGTTGTACG GGCTGGGCGT GGAGGGCAAT GCGCCGAAGA TCTTCGGCAA GGTCAGCAAG
TCGGGCGTGC CTGCGGCGGC CGTCGCGGCC ACGGTCGCGA TCGGCGCCCT GTGTTTCATA
GCGAGCAAGG TGGGCGACGG CACGGCGTAC ACGGTGTTGG TCACGGCCTC CTCGGTGGCC
GGGTTCATCA CCTGGATCGG TATCGCCTGG GCGCACTACC GGTTCCGCCG CGCGTGGAAC
GTGCAGGGTC GCTCGCTCGA TGAGCTGCCG TACCGGGCCT GGTTGTACCC GGCTGGTCCG
GTCGTGGCGC TGCTCATGTG CGTGGGCGTG ATCGCCGGGC AGTACTACGT CTCGCTCCGC
GCCGGAGAGG AGGGTGGCTG GGAATTGCTG CTCACCTCGT ACGCGGCGCT CATCCTGTTC
GTCGGTCTCT GGGTGGGGCA CAAGCTGGTC ACCAAGGCCC CGACGGTGGA CCTGCGTACC
GCCGATCTCT CGCCCTCGGC GGCGGCCTCT GCGCACCGCG ACCCCGACCC CGCTTCGGCC
TGA
|
|---|
| Protein sequence | MSSPLGITPD PALRKGLQTR HISMIALGGA IGTGLFVASG KTISDAGPGG ALAAYALMGV
MVFFLMQSLG EMSAYMPCSN PFEEYGTRFV SRSFGFAAGW NYWFNWSITL AAEVVAAGLI
MKFWLPDVPS WIWSLIFMVG LLALNLFAVK AFGEAEFWFA SIKVIAVVVF LIVGVLMVLG
VIGGTSPGFS NWTIGDAPFV DWPLGMLSVF LIAGFAFQGT EMIAVAAGEA MEPRSAIPKA
VRTVFFRILL FYIGTLTIIG FLIPYTNPEL LNGSEDNVAV APFTLVFKLA GIDAAASIMN
AVILIAILSA GNASLYAATR ALYGLGVEGN APKIFGKVSK SGVPAAAVAA TVAIGALCFI
ASKVGDGTAY TVLVTASSVA GFITWIGIAW AHYRFRRAWN VQGRSLDELP YRAWLYPAGP
VVALLMCVGV IAGQYYVSLR AGEEGGWELL LTSYAALILF VGLWVGHKLV TKAPTVDLRT
ADLSPSAAAS AHRDPDPASA
|
|---|
| |