Gene Tpau_0616 details

Gene Information

• Locus tag: Tpau_0616
• ID: 9154752
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 636389
• End bp: 636988
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 71%
• Product: protocatechuate 3,4-dioxygenase, alpha subunit
• Protein accession: YP_003645593
• Protein GI: 296138350

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGCAC GCTCACGCAC TCCCGATCAG ACCATCGGCC CCTTCTTCGG TGACGGCCTC 
TCTCTCCCCG GCGCCGAACA CCTCATCGCA CCCGGTCATC CCCGGGCGAT CCGGCTGTCC 
GGCACCGTCT TCGACGGCGC CGGGGACCCG GTCCCCGACT GCCTGCTGGA GATCTGGCAG 
CCCGACGAAC AAGGCCGCCC CGCGCGGCCG GCGGCACTCA TCCCGCGCGA CGGTCACTCG 
CTCCAGGGCT GGGTGCGCGA TCCTCACGAT TTCGCCGGGT GGGGGCGTGC CGCCACGGGC 
CACACGGGTC GATTCGGATT CACCACGGTC GAGCCGGGGC CGGCGCAACC CGGTGCCGCG 
CCGTTCATCT CGGTCGCGGT GTTCGCCCGG GGTTTGCTCA CCGGACTGTT CACTCGGGTC 
TACCCGCCCG AGGCGACCGC TGCTCTGGCG GCCGATCCGC TGCTGTCCAC TCTGCCCACC 
GACCGCCGAT CCACCGTGAT CGCCCAGCGC GGCGACGATG GCTCCCTCCG GTGGGACATC 
AGGCTCCAGG GTGAGCGGGA GACGGTCTTC CTCGACTTCG TCGGCGCGGG TGCGCGATGA 

 

Protein sequence

MTARSRTPDQ TIGPFFGDGL SLPGAEHLIA PGHPRAIRLS GTVFDGAGDP VPDCLLEIWQ 
PDEQGRPARP AALIPRDGHS LQGWVRDPHD FAGWGRAATG HTGRFGFTTV EPGPAQPGAA 
PFISVAVFAR GLLTGLFTRV YPPEATAALA ADPLLSTLPT DRRSTVIAQR GDDGSLRWDI 
RLQGERETVF LDFVGAGAR