Gene Tpau_0472 details

Gene Information

• Locus tag: Tpau_0472
• ID: 9154608
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 498620
• End bp: 499429
• Gene Length: 810 bp
• Protein Length: 269 aa
• Translation table: 11
• GC content: 70%
• Product: Squalene/phytoene synthase
• Protein accession: YP_003645452
• Protein GI: 296138209

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTCCA CCGAGCGGTA CACGGCCGCG GCCGTTGCGG CCTCCGCGGT CGTGATCCGC 
CAGTACTCGA CATCGTTCTC GCTGGCCAGC CGGATGATGC CGCGCCGTGT ACGCTCGCAC 
ATCACATCGA TCTACGGGCT CGTGCGCGTC GCGGATGAGG TGGTCGACGG TGCCTGTCCG 
GTCGATCCGC GCGCACATCT CGATGCACTG GAGGTGGCCA CGGAGCGCGC GATCGAGACT 
GGTTTCAGCA CCGACCTGGT GGTGCACGCC TTCGCGAATA CCGCGCGCGC AACCGGATTC 
GGCACCGAGC TCACGCGCCC GTTCTTCGCT TCGATGCGCG CCGACCTCAC CCCCGCGCCG 
CATACGGCCG AATCGCTGGC GCAATACATC TACGGTTCCG CGGAAGTAGT CGGGTTGATG 
TGCCTGCGCG CCTACCTCCA CGGGGCGGCG CCGTCGGACT ACGAAGCGCT CGCATCCGAC 
GCGAAACGCC TGGGCGCGGC GTTCCAGAAG ATCAACTTCC TGCGTGACCT CACCGATGAC 
GAACTGCGCC TGGGCCGCGC CTACCTCCCC GAGCTGACGC CCGACGCCTA TGCGGCCGCG 
CTCGCGGACG CTCGCGAGGA CCTGGAACAG GCCCGACGGG GCATCGCCCG ACTCCCAGGT 
GATGTGCGGC GCGGCGTGCG CGCCGCCGCC GACCTGTATT CCGCTCTGCT GCACCGGCTG 
GAGGCCGCCG GGCTCGACGG TGCCCGCGCC GGTCGTGTCC GCGTCCCCGC GGCCTCGAAG 
CTGCTCGCGG TGGTCCGCGG CGTCCGCTGA 

 

Protein sequence

MDSTERYTAA AVAASAVVIR QYSTSFSLAS RMMPRRVRSH ITSIYGLVRV ADEVVDGACP 
VDPRAHLDAL EVATERAIET GFSTDLVVHA FANTARATGF GTELTRPFFA SMRADLTPAP 
HTAESLAQYI YGSAEVVGLM CLRAYLHGAA PSDYEALASD AKRLGAAFQK INFLRDLTDD 
ELRLGRAYLP ELTPDAYAAA LADAREDLEQ ARRGIARLPG DVRRGVRAAA DLYSALLHRL 
EAAGLDGARA GRVRVPAASK LLAVVRGVR