| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_0253 |
|---|
| Symbol | |
|---|
| ID | 9154388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 264528 |
|---|
| End bp | 267401 |
|---|
| Gene Length | 2874 bp |
|---|
| Protein Length | 957 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | TrwC relaxase |
|---|
| Protein accession | YP_003645242 |
|---|
| Protein GI | 296137999 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGGGC GCGGTGAACG CCCTGTGATG ACCATCCACG TCCTGCACGC AGGCGACGGC
TACACCTACC TCACCCGCAA CACCGCCTCC GGTGACCGGG TCCGGGAAGG CCGCGATCAG
CTCTCCGCCT ATTACCTCGA AGGCGGCACC CCGCCGGGCC GTTGGCACGG CCGCGGCCTG
GCCGCCCTGG CAGCCCACTC CCCCGCCTCC GAACACGCCA CAGGGCCGGT CGCTGGGCAG
GTCACCGAGG CGCAGATGAA GGCACTGTTC GGCGAGGGCC TGCACCCGGA CGCGGACGCC
ATGATGAAGG CTGGCGCGAG CGTCAAAGAC GTCAAGCTAG GCAACAAGTT CCCGGTCTTC
GCCAATGAGA TCCCGGTGCT CGTCGCGTTC AACACCGCCG TCAAGGAGCA CGAGCGTGAG
CACGGCGCTG CGCCATCGAA GGAGGTCCGC GACGCGCTGT GGAAGCAGGT CGCCCGCACC
GAATTCGAGC GTGCCAACCC CAACGAACCA GGCGCAGACG ACAAGCGTGT CCTGGCCTGG
GCCGCGAAGG AGAAGGGCAA GGTCCGCCAG CCCGTCGCGG GCTACGACCT GACCTTCACC
CCAGTCAAGA GTGTGTCGGT GATGTGGGCG CTCGCCGACC CCGAAACCAG GGCCAAGATC
GAGACCGCGC ACCAGGCCGC CGTGGGCGAT GCCCTGTCGT GGCTCGAAGA CAATGCGGTG
TTCACCAAGC GTGGCGCGCG CGGTGAACAG CAGCTCAGCA CCGCCGGTCT GACGGTGGCG
CAGTTCGACC ACTACGACAC CCGCGCAGGG GATCCGAACC TGCACACCCA CTGCGCCGTC
TCCAACAAAG TCTTAGGCTC CGACGGCCGG TGGGGCGCGA TCAACAGCCT GCCGTTCTTC
AACAACGCCG TCGCCGCGTC GCAGCGGTAC AACGCGGTCC TGGCCGAGAC CCTCCGTGCC
GAGCTGGGGG TGGAGTTCGT GGCGCGGCAG GTCGGGCGGG GTAAGCAGCC GATCATGGAG
ATCGCGGGCA TCGACACGGC CCTGCTCGAC GGGTTTTCCA CCCGTCGTGC ACAGGTCCGC
GCGCGGCACG AACAGCTGCT CGCGCAGTAC ATCGCCGACC ACGGCCACAC CCCCGGCAAG
CACGCCGAGT ACGCCCTGTT CCAGCAGGCC ACCCTCGAAA CCCGCGAGGG CAAAGACGTC
GGCCCCGAAG GTTCCGGGAG CCTCGGAAAA CAGCTCACTG CATGGCAATC CAAGGCCCGC
GCTCTTGCCC CCGAGCAGGC CCAAGGCGAG CAACTGCTCG CCCAGTGCCG CATTGCAGGG
CGCGAAGCGC TCGCCGCGAT TTCCAACGAT CCGGATGCCG CACCCGATCG GGCCTGGCAC
GGCCCCGCCG CCGCGGCCGA GGAGGTTCTC CACAAGGTCT GCGAGCAGCG ATCCGTCTGG
CGCGAAACGC ACCTGCGCAC CGCCGCCGAG GCCATCATCG CCGCCAAGCT CCTCCCCTCA
GGATCCGATC GCCGCGAGCT CGTGGACACC GTCGTCGAAC GGGCTCTTGC TGAGTCGATG
ATCGTCGGCC CCGGCCACGA ACTCCTCGAC ACCACCACCG GAGAGATCCC CGAACGTCTT
CGCCGTGACA ACGGTGAACA CGTCCTCACC AACCCCGGCG GCCCGCTGCT GACGAGCAGC
CGCATCGTCG ACGCCGAAAA CACGATCCTC GACGCTGCCG CCACCCCCAC CGCGCACGTC
GCCACCAACG CGGTCATCGA CGCCGGCATT GCCTCCGTTG AGGAGAACGA GCCGTTCCCG
CTCAATGCCG GCCAAGCCGA ACTGGTGCGG CACTTCTGCG GCTCCGGAGC CCTCGTTGCC
GCCGGTGTCG GCCCTGCCGG CACTGGCAAA ACAACGTCGA TGAAGGCCAC CGTCGCTGCC
TGGACCGCCG ACGCCAACCG GCTACCCGGC GCCGCCGTGA ACCGTCAGGT CATCCCCCTC
GCACCGTCCG CGGTTGCGGC CACGAAGCTC GGTGATGAGA TCGAGCTGAC GGGCAACACC
ATCGACTCTT TCACCTACTG GTGGACCGCC ATGGGCGGCC GCGAAACCTA CCTCACCGCG
CACCAGGTTC TCGCTGACCC CGACGCCGGC TTCCTCGCCC GCCGCGATGC TCGCGATGCC
CTGAAAAGGT GCCCGACCGG TGCGATGTAC CTGGTCGACG AGGCCGGTAT GGCATCGACC
CGCAACCTTG CGATCATGGT CGATATCGCC GAGCAGACCG GCGGCGTCGT CCGGTTCCTG
GGCGACCCGT ACCAGCTCGA CGCCGTCACC ACCGGCGGCG CGTTCGCCAT GCTCGCGAGA
GCCACCGACG CCCCCGAACT GACCGACGTC GTCCGGTTCG GCACAGACAC GCAGCAAGCC
GAGAATTCGC TCGCCCTGCG CGCCGGTGAC GAGGCCGCAC TCGACCTCTA CGAACAGCGC
GGCTGGACCC ACCACCACAA CACCGCCGGT GAGGCGATCG ACGAGATGGT CGCCGCGCAC
CTCGCCGACA CCGCCTCGGG GCGCAATTCC ATCGTCCTGG CGTCCACCCG TGAGGAAGTC
GCGGCGATCA ACGCCCAAAT CCAGGCCCAC CACCGCAGCG GCGGCAGAGC CCAAGCCGGG
CGAACCGTGG ACCTCTCCGA CGGTCTCGCC GCCGGTGTCG GAGACCGGAT CGTCACCCGC
GACAACGACT CCGACTACCG CCAGATCGGC GGCAAACGCG CCAACAGTCG CGTTCTCAAC
GGTGACCTAT GGAACGTCGA GAAGATCCAC TCCGATGGCT CGCTGACCGC CCGCCACATC
GAAGACGGCG GCCGCATCCA CCTGCCCGCC AGCTACCTCA CCGCGAACAC CTGA
|
|---|
| Protein sequence | MLGRGERPVM TIHVLHAGDG YTYLTRNTAS GDRVREGRDQ LSAYYLEGGT PPGRWHGRGL
AALAAHSPAS EHATGPVAGQ VTEAQMKALF GEGLHPDADA MMKAGASVKD VKLGNKFPVF
ANEIPVLVAF NTAVKEHERE HGAAPSKEVR DALWKQVART EFERANPNEP GADDKRVLAW
AAKEKGKVRQ PVAGYDLTFT PVKSVSVMWA LADPETRAKI ETAHQAAVGD ALSWLEDNAV
FTKRGARGEQ QLSTAGLTVA QFDHYDTRAG DPNLHTHCAV SNKVLGSDGR WGAINSLPFF
NNAVAASQRY NAVLAETLRA ELGVEFVARQ VGRGKQPIME IAGIDTALLD GFSTRRAQVR
ARHEQLLAQY IADHGHTPGK HAEYALFQQA TLETREGKDV GPEGSGSLGK QLTAWQSKAR
ALAPEQAQGE QLLAQCRIAG REALAAISND PDAAPDRAWH GPAAAAEEVL HKVCEQRSVW
RETHLRTAAE AIIAAKLLPS GSDRRELVDT VVERALAESM IVGPGHELLD TTTGEIPERL
RRDNGEHVLT NPGGPLLTSS RIVDAENTIL DAAATPTAHV ATNAVIDAGI ASVEENEPFP
LNAGQAELVR HFCGSGALVA AGVGPAGTGK TTSMKATVAA WTADANRLPG AAVNRQVIPL
APSAVAATKL GDEIELTGNT IDSFTYWWTA MGGRETYLTA HQVLADPDAG FLARRDARDA
LKRCPTGAMY LVDEAGMAST RNLAIMVDIA EQTGGVVRFL GDPYQLDAVT TGGAFAMLAR
ATDAPELTDV VRFGTDTQQA ENSLALRAGD EAALDLYEQR GWTHHHNTAG EAIDEMVAAH
LADTASGRNS IVLASTREEV AAINAQIQAH HRSGGRAQAG RTVDLSDGLA AGVGDRIVTR
DNDSDYRQIG GKRANSRVLN GDLWNVEKIH SDGSLTARHI EDGGRIHLPA SYLTANT
|
|---|
| |