Gene Plim_4206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_4206 
Symbol 
ID9140927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand+ 
Start bp5378128 
End bp5378871 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content51% 
IMG OID 
ProductXylose isomerase domain protein TIM barrel 
Protein accessionYP_003632213 
Protein GI296124435 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.386672 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGTTG CAATTTCTTC TCGATGTTTT TCGGATGTTT CGTTCGCAGA AGCCTGCTCG 
CAGATCGCAG ATCTGCATTA CGACAAGCTC GAATTGTGGA TGGACGACGC CTCGGAACAT 
TTGAAGTCGT CTTATGTGGC CGAAAATCCC GAGCGATTCG TCAAGCAGTA TCGGGAAGCG 
ACCCGGTTGA CACCTGTGGC GATCAGCCTC GAGCAAGATC TTCCGCCCGG CCCATTTGAA 
TCCATTTGTA AACTGGCCAA GATCCTCAAG ATCACCCAGA TCACGATTCC AGCGGGTGCT 
TTGGGTACAC CTTTTAATGA AGAGATTGAT CGCCTGCGTA GTCGCCAGGC GATTGCCAGC 
ACCTCGGGAA TTCGTCTCTC CTTAAAGATG AAGACTTCGA CACTGACAGA AGATCCACGA 
ACGGCTGTCG AGCTTTGTCA GTCAGTTCAA GGATTGGGGA TTACTCTCGA TCCGAGTGCC 
GTCATCTGTG GGCCATTCTC GAATCAATCG ATTGATCCCG TCTTTCCTTA CACTTATCAC 
ACGCATTTGA GGGATACCTC TCCCACACAA TTGCAGATTC CCGTCGGTCT GGGGGAAGTC 
GATTACAACC GGATCATCAG TCAGTTGCAG CGCTGCAACT ACACGAGGGC TCTTTCCGTC 
GAGATGTATC CGGAATTGAT TACCGATTCA GATCGTTCGC TGGAACTCCG GAAGATGCGC 
ATGCTGCTGG AAAGCCTGCT CTAA
 
Protein sequence
MFVAISSRCF SDVSFAEACS QIADLHYDKL ELWMDDASEH LKSSYVAENP ERFVKQYREA 
TRLTPVAISL EQDLPPGPFE SICKLAKILK ITQITIPAGA LGTPFNEEID RLRSRQAIAS 
TSGIRLSLKM KTSTLTEDPR TAVELCQSVQ GLGITLDPSA VICGPFSNQS IDPVFPYTYH 
THLRDTSPTQ LQIPVGLGEV DYNRIISQLQ RCNYTRALSV EMYPELITDS DRSLELRKMR 
MLLESLL