| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4167 |
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| Symbol | |
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| ID | 9140887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | + |
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| Start bp | 5332385 |
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| End bp | 5334271 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_003632176 |
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| Protein GI | 296124398 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCATTTC GACAACTGAT CATTCCACCG ATCTACATTA TCCTGTACGG ATTCACATAT
CTTCTGGCCT ACTCTCTGCG CTTCGATTTC GAAGTTCCCA GTGAGGTCTG GGGGAGATTT
CTAGCCACTT TTCCACTGGT GATTGCCACC AAGTCGCTGG TGAATCTATT GACTCGTCAA
TGGCGCAGGA AGCACCGTTA CACCTCGCTG GTTGATGTCA TCTACGTCAC CGGAGATGCC
TTTTTTGCAG CGACATTACT TTTGGCCATC AATGCCTTTC TGCCCTCGGG AATCGTGATT
CCGCGATCGA TTGTGTTGAT CGATCTGATG CTCACAGTTC TGGCAATTGC CGGCCTGCGT
TCGATGATTC GCAGCTATTG TGAGGTGATT CATCCTAAGC TCCACCGCAG GCTGGGTGGT
ATGTCGCAAC TGACTCCACG CCGGGCTTTG ATCTACGGTG CAGATGCCAG TGCAGTGGCA
ATTTTCCGCG CACTCAAAAG CGGCAACGAA GAGTATCGCA TCTGTGGTTT TATCGATCCT
GAAGGTTTCT CTCAGTCGAG CATTATTGGC GAAGCCGAAG TCTTCAGTGG CCAGATCGAT
CTTGCAAAAA TCGCTAAAAA AGTCCGAGCG GAAATGTTGC TCATACCGGC ATCGACGCCC
GGGCGAATCG TGCGAGAGTT ACTCGTGCAA TGTGATGACC AACATCTTCT GGCCCATGTG
ATCCCGGGTG TCGATGAAAT CGTCAATGGA CGCATTCGGC TGGCGACGCG GGAAGTGACC
ATCTCCGACC TGTTACGCCG CGAACCGACA AAGCTCGATT TTGAAAGTAT GCGGAGTTAC
ATCTCTCGTC GCCGTGTGCT GGTCACGGGA GCTGCGGGAA GTATTGGCTC AGAGCTGTGC
CGACAAATTC TGGCTCTGAA TCCGGAAAGT CTGATTCTGC TCGATCAATC CGAGCCTGGC
ATTTTTGCCA TGGAACAGGA GTTCCAGACG CGTACGACGG GTGGCACTCG ACTGGTTTAC
GAGATCGCCG ATATGCGCGA TCAACCCACG CTCGAACAGA TCTTCGATAC CTACAAGCCC
CAACTGGTTT TCCATGCAGC GGCATATAAG CATGTTCCTC TTATGGAAGC CAATCCGCAG
GAAGCGATCC GTAACAACAT CTTCGGTACA AAGGCACTGG TCGATGCTGC TGATCAATTT
GGCGTGGATC GCTTTGTGTT GATTTCGACC GATAAAGCTG TGCGTCCCAC CAACATCATG
GGCTCTACAA AACTCTTTGC CGAGAAATAT CTGCAGGCGA CTGCCCAGAA ATCCAAAACC
GAATTCATGA CGGTTCGCTT CGGGAATGTG CTCAACTCGG CTGGCAGTGT GGTACCGACA
TTCCGCCGAC AGATTCTCGA AGGTGGCCCG ATCACTGTCA CGCATCCCGA GATGGTGCGG
TTCTTCATGA CGATTCCTGA AGCCGTTCAA CTCGTGCTGC AGGCAGGGGC CATCGGACAA
ACCGGCGGCG TCATGATTCT GGATATGGGC GACCCGGTGA AAATTCTCGA TCTGGCCCGC
GATATGATCT ATCTTTCCGG GCTCAAGTAC CCGGACGATA TCGACATTGT CTTTACTGGT
CTTAGACCCG GCGAAAAGCT CTACGAAGAA CTCTTCTATG AATCCGAAGT CTCGGCCGAG
AAGATCCACG AAAAGATTTT CATGGCCCAC CGGGCTCCGA TTTCACCTCG TCTGGTGAAG
GAAGCTCTCG CTCGTCTGCA GTCAGCCGTC GAACTTTCCC GGGAAGCTGC CGCTGCGACT
TTGCGTGAGA TCACGGCTGA GTTCGTGGCA ATTGATGAGG GGACATCTTC CGAGCACATC
AGCCAGCCCA CTCGCAAAGC GGCTTAA
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| Protein sequence | MPFRQLIIPP IYIILYGFTY LLAYSLRFDF EVPSEVWGRF LATFPLVIAT KSLVNLLTRQ
WRRKHRYTSL VDVIYVTGDA FFAATLLLAI NAFLPSGIVI PRSIVLIDLM LTVLAIAGLR
SMIRSYCEVI HPKLHRRLGG MSQLTPRRAL IYGADASAVA IFRALKSGNE EYRICGFIDP
EGFSQSSIIG EAEVFSGQID LAKIAKKVRA EMLLIPASTP GRIVRELLVQ CDDQHLLAHV
IPGVDEIVNG RIRLATREVT ISDLLRREPT KLDFESMRSY ISRRRVLVTG AAGSIGSELC
RQILALNPES LILLDQSEPG IFAMEQEFQT RTTGGTRLVY EIADMRDQPT LEQIFDTYKP
QLVFHAAAYK HVPLMEANPQ EAIRNNIFGT KALVDAADQF GVDRFVLIST DKAVRPTNIM
GSTKLFAEKY LQATAQKSKT EFMTVRFGNV LNSAGSVVPT FRRQILEGGP ITVTHPEMVR
FFMTIPEAVQ LVLQAGAIGQ TGGVMILDMG DPVKILDLAR DMIYLSGLKY PDDIDIVFTG
LRPGEKLYEE LFYESEVSAE KIHEKIFMAH RAPISPRLVK EALARLQSAV ELSREAAAAT
LREITAEFVA IDEGTSSEHI SQPTRKAA
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