| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4129 |
|---|
| Symbol | |
|---|
| ID | 9140849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 5297216 |
|---|
| End bp | 5298436 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase family 2 |
|---|
| Protein accession | YP_003632139 |
|---|
| Protein GI | 296124361 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAA ACTCCATGCA GAATGCCGAA GTCACCAATC ATCGTCGCTC AGGATCGGCG
TCAACTGCTG GTCACGACAG ACTTTGCGTT GACACTTTCG GAGGCCATTT TTACACTCCC
GACGACCTCG CCGGGCAGGA TTCCGGCCTT TGGGTGGTTT GCAGTGTTTG GGCAAGGAGG
CGTCGCGTGT CGACGATCAG CCACATCCTG AAGAGCCTTC ATTGCCCGGT GCTGTGGCTT
GCGTCGAGCT GTTTCCTGAT GCTTAGCGGC TGTGCTGATG GCCTGTGGTC TGGCACTGAA
GATCATCAAC TGGGCCCCTG GCCTGAGCCT GTCGTGATCG TGATTGGCGA GAGTTCCAGC
GAGATGATTG ACGTTTCCCA CATCGAGTCA GCCAACGCCT CGAACAGTGC TGCAACTTTA
GACGCTCAAG AGCCACAACG AATGGCTCAT CAAGCGGCCA AACCTGTGAT CGATGATGTC
CGCCATCTCG ATGAAACACC TGGCTCGACA GGTCTCGTCA TTCAGGTGAG ACACGAATCA
ACCGCCCACG AATCGATGCG GCTGGCGCAG GCACTCTTTG CCATTCAACC TGAGATCGAC
TCACCACGAG AACAGGCTGC CAACGGATCG GTGGTCAAGT CTTTGCCATT CATTCATCAG
CCGGCGAAAA GCCCGCTCAA GCCGTGGAAA TACCTTGTGC TGCATCACAC GGCAACGACA
TCGGGAGATG TCGAGAGCAT TCATCAGAGT CACTTGAAGA ACAAAGATCG ATCGGGCAAT
CGCTGGCTGG GGATTGGTTA TCACTTTGTG ATTGGCAATG GTGATGGCAT GCCCGATGGT
GAGATTGCCC CGACTTTTCG GTGGCATCAG CAACTGCCGG GAGCCCATGC CGGAAACAAA
GAGTTTAACG ACTGCGGGAT TGGCATCGTG CTGGTCGGAA ACTTTGCGAA AAAACCACCC
ACAGAAGCTC AAGTCAGCGC TACCAAACGC CTCGTTTCTG ATTTAGCTAA TGAGTTCGTG
ATCGAGAGTT CCTGCATTAT TGGCCATGGG ACGGTCAGGG CTACGGAATG CCCTGGTCGC
TACTTTCCTA TGGATGTTGT CAAGAAGGGT CTCGGGATTG GTCATGAAGG CCAGCCTGAT
GCCGAGCCAC CGCATGCCAC ACCGCCCGGA AAAACTGCGG CAGCGACTCC CCGTCGCACG
AAGGGAAGCA ATTCGCAATG A
|
|---|
| Protein sequence | MPANSMQNAE VTNHRRSGSA STAGHDRLCV DTFGGHFYTP DDLAGQDSGL WVVCSVWARR
RRVSTISHIL KSLHCPVLWL ASSCFLMLSG CADGLWSGTE DHQLGPWPEP VVIVIGESSS
EMIDVSHIES ANASNSAATL DAQEPQRMAH QAAKPVIDDV RHLDETPGST GLVIQVRHES
TAHESMRLAQ ALFAIQPEID SPREQAANGS VVKSLPFIHQ PAKSPLKPWK YLVLHHTATT
SGDVESIHQS HLKNKDRSGN RWLGIGYHFV IGNGDGMPDG EIAPTFRWHQ QLPGAHAGNK
EFNDCGIGIV LVGNFAKKPP TEAQVSATKR LVSDLANEFV IESSCIIGHG TVRATECPGR
YFPMDVVKKG LGIGHEGQPD AEPPHATPPG KTAAATPRRT KGSNSQ
|
|---|
| |