| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4082 |
|---|
| Symbol | |
|---|
| ID | 9140802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 5236343 |
|---|
| End bp | 5237812 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | PepSY-associated TM helix domain protein |
|---|
| Protein accession | YP_003632092 |
|---|
| Protein GI | 296124314 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.16128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACCA GCGAATTCTT CAGATATGCA TTGCCTGCCT ATCGCACTGT CTGGCGATGG
CACTTCTATG CAGGGCTTTT CACGGTCCCG TTTGTCATCA TTCTGTCACT CTCGGGAATC
GTCTATCTCT TCAAAGCCGA GATCGAAGAC TGGCTCGATC AGCCATACAA CCATCTGGTG
CTGACTGGTC AGCCAGCAAG TCTGTCAGAG CAAGTTCAAG CGGCTCTCGC GTCAAAGCCA
GAGAGTCGTT TTGTTTCTTA TGAGCTTCCC GTCTTACCCC ATCATGCCAG TCGAATTGTC
GTCAGCGATG CCGGCAAGAA CTGGCGGATC TATGTACATC CACAGACGCT GGCCATTTTG
CATGCAGTTC CCGAACAGGA TCGACTCATG CGCCAGATAT TCCGGTTGCA TGGTGAACTG
ATGCTTGGAG AGGACGGTTC TCATCTGGTT GAGCTCGCTG CATCCTGGAC AATCATCATG
ATTCTTACGG GACTCTATCT CTGGTGGCCC CGTCATCTGC GTGGCTTCGG CGGGATTCTC
TACCCTCGTT TCACAAGTGG AAGGCAGCGT TTTCTCCGCG ATCTGCATGG AGTCACGGGA
TTCTGGATCT CCGCCTTTGC ACTCATTCTG CTGGTTTCCG GTTTGCCATG GTCTCACTTC
TGGGGTGATT ACTTCCGTGA GATCCGCAAG CTCACGGGCA CGTCCGTCGC ACAGCAGGAT
TGGTCGAATC GCTCGGAGAA CCCTCAGACA CGACCCGTTA CTTCCGGGGC CAAACAGGCA
TCACCCACCG TTCCCACAAC TGCTGATGGC GAACATGCCG GGCATGCCTC ACGAGAATCC
AGCTCGAACG CCGGAGAATC TCCCACAAAG TCGGATCGCT CGAACAGAAG ACGAAATGCC
GCCCCGGTCT CGCCCGAAAC GTTGGCGCAG TTGCCACTCG TTGTACAAGT CGTGGAGCCG
CTCCAGTTGC CACATCCCGT GATCTTGACT CCACCCGCTT CTGAGCGACA GCCCTGGACC
GTGAAATCAA TGACTGCGAA TCGTCCCTGG CGGGAGACTC TGAAAATCGA CGCCATGCAA
GGTTCGATTC TCTCTCGCGA AACTTTCTCT GATCGTCACT GGATTGATCG CGTTGTCAGT
ATTGGAATTG CCCTCCATGA AGGACGACTG TTTGGTTGGC CCAATCAACT TCTCGGCTTA
CTTACGGCTC TTGGCCTGAT CCTGTTGTCC TGTACGGGGC CACTGATGTG GTGGCGACGA
CGAGCGCCAA GCACGTTAGG TGCCCCTGCC GAATCAAAAA TCGCGATGCG TCATGAAGTC
CTTTTTGCCC TACCCTTCAT GCTTTTCGTG ATCCTTTTGG GGATTCTGCT CCCCATGTTC
GGAGTCTCGC TGCTGGCTGT CCTGCTGATT GAACGAGTCA TTCTGAGAAG AATTCCACCA
CTACGAAACT GGCTGGGGCT GGCTTCTTAG
|
|---|
| Protein sequence | MSTSEFFRYA LPAYRTVWRW HFYAGLFTVP FVIILSLSGI VYLFKAEIED WLDQPYNHLV
LTGQPASLSE QVQAALASKP ESRFVSYELP VLPHHASRIV VSDAGKNWRI YVHPQTLAIL
HAVPEQDRLM RQIFRLHGEL MLGEDGSHLV ELAASWTIIM ILTGLYLWWP RHLRGFGGIL
YPRFTSGRQR FLRDLHGVTG FWISAFALIL LVSGLPWSHF WGDYFREIRK LTGTSVAQQD
WSNRSENPQT RPVTSGAKQA SPTVPTTADG EHAGHASRES SSNAGESPTK SDRSNRRRNA
APVSPETLAQ LPLVVQVVEP LQLPHPVILT PPASERQPWT VKSMTANRPW RETLKIDAMQ
GSILSRETFS DRHWIDRVVS IGIALHEGRL FGWPNQLLGL LTALGLILLS CTGPLMWWRR
RAPSTLGAPA ESKIAMRHEV LFALPFMLFV ILLGILLPMF GVSLLAVLLI ERVILRRIPP
LRNWLGLAS
|
|---|
| |