| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4007 |
|---|
| Symbol | |
|---|
| ID | 9140727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 5146100 |
|---|
| End bp | 5147926 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003632017 |
|---|
| Protein GI | 296124239 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA CTTCATCAAC CAGTCCTTCG GAACCGGCAA GCCATCCGGA AGGGGCATCG
ACTCCTGCGG TTCAGCCGAG CACATTACGC TGGTGGCCGG CGGCATTCCT CGTGGTGCTG
ATGTTTCTAC TCCGCATGAT ACCTGCCGTG GTGGAGGCAC CCTCTTTACC TGTAATTTTT
GCGAGTTTTC TGGGCCCTGC CGTCGCAGGT GTGTTGATTC TGCTGTGGTG GGTCACATTC
AGTCGCTCCA CGATTCGCGA ACGGCTGCTG GGTGCCCTGC TCACCATCGC CTTGATCGGA
ATTTCCATCA CGCTTCTGCA TCCGAGTTTG GCCAACATGA ATGCCATCAT GTATGTCGTG
CCTTATGGCG TGGGCGCTTT TGCTGTGAGT TTATGTCTTC TGGCAGCTCA GCCGAAATGG
CGATTGCCAG TGGCACTGGG AGCAGTGGCT CTCACCTTAG GATACTGGGA TTCGTTGCAA
TCGGCTGGGG TGGACGGAAC CTTTCAACCC GAACTCTCCT GGCGGTGGAT CCCGACTGCT
GAAGAGCGGT ATCTGCAAAC AGTCGCCAGT CAGGCTGCTG AGACTCCCAG CCCTGCTCCA
TCGGAGAAGA TTCTGCTGGC AGATGCCGCT TGGCCGGCGT TTCGAGGGGC GGCTCGTGAT
GGACGTCAAC CGGGGATTGT CCTGAAGTCG AACTGGGAGG AGACACCTCC GAAATCGCTC
TGGAAGAAAC CGATTGGCCC CGGTTGGTCA TCATTTTCTG TCGCAGGAAA TCGGCTCTTC
ACTCAGGAAC AGCGCGGCGA AGACGAAGCT GTGGTCTGCT TGAATACGAC CACCGGTGAG
ACGATCTGGG CCACAACATA TCCCAGCCGC TTCTGGGAAG CTGTGGCGGG AGCCGGTCCG
CGGGCAACGC CCACCATTGC CGATGAAGGT CTCTTTGCCC TCGGAGCCAA TGGAGTGCTC
CTGGCAATGG ACCCAGTCAC GGGAGCCAAG CGCTGGACGC GCGATCTCCA GGTGGATGCC
GGGAGAAAAC CACCCATGTG GGGTTTTGCC TCATCACCAT TAGTGGTGCA GGGATTGGTG
ATTGTGCATG CCGGTGGCGC GGAAAATAAA GGTGTGCTGG CATATCGGGC GGCTGATGGC
GAACTGGCGT GGTCAGTCCC TTCGGGAGAT CACAGCTACA GTTCAGCTCA ACTGGCGTCA
TTTGATGGTG TGAGCGGGTT GCTCATGAGT ACGAATGCCG GTCTGCAATT TCTGGATGTC
ACAGATGGTC ACACAATCTG GGAACATCGC TGGGCTGGCG ACAATTATCG GGCCTTGCAG
CCACTGGTGG TAGGAAACTC GGCGTTCATA GCCACGAGCT TAGGGTTGGG AACTCGCAAG
GTGACAGCAC GCCAAAAGGG TGATCAGTGG GAAGTGACTG AAGACTGGAC TTCTCGCGAT
TTGAAGCCGG ATTTCAATGA CTTCGTTGAA TATCAGAACT ACCTCTATGG CTTTGATGGC
AACATCTTTT CCTGTGTTTC GTTAGAAACC GGCAAACGTG CGTGGAAGCG GGGTCGCTAC
GGGAATGGCC AGGTTTTGCT GCTGCCCGAT GCGGGTCAAC TCCTGGTCAC CAGTGAAACA
GGCGAAGTGG TGTTATTGAA GGCTGATCCT GCGAAGCCTG TTGAGCTGGC CCGGTTCCCC
GCCATCGAAG GCAAGACCTG GAATCATCCC GTGGTCATTG GTTCCAAACT TTATCTGCGC
AATGCCGAAA TGGCGGCGTG TTATGAACTG GCATTGGATC ATCTTCCAGA GCAGCAGTCT
CAGAGTGTGG TACAACAGGG AAATTGA
|
|---|
| Protein sequence | MTTTSSTSPS EPASHPEGAS TPAVQPSTLR WWPAAFLVVL MFLLRMIPAV VEAPSLPVIF
ASFLGPAVAG VLILLWWVTF SRSTIRERLL GALLTIALIG ISITLLHPSL ANMNAIMYVV
PYGVGAFAVS LCLLAAQPKW RLPVALGAVA LTLGYWDSLQ SAGVDGTFQP ELSWRWIPTA
EERYLQTVAS QAAETPSPAP SEKILLADAA WPAFRGAARD GRQPGIVLKS NWEETPPKSL
WKKPIGPGWS SFSVAGNRLF TQEQRGEDEA VVCLNTTTGE TIWATTYPSR FWEAVAGAGP
RATPTIADEG LFALGANGVL LAMDPVTGAK RWTRDLQVDA GRKPPMWGFA SSPLVVQGLV
IVHAGGAENK GVLAYRAADG ELAWSVPSGD HSYSSAQLAS FDGVSGLLMS TNAGLQFLDV
TDGHTIWEHR WAGDNYRALQ PLVVGNSAFI ATSLGLGTRK VTARQKGDQW EVTEDWTSRD
LKPDFNDFVE YQNYLYGFDG NIFSCVSLET GKRAWKRGRY GNGQVLLLPD AGQLLVTSET
GEVVLLKADP AKPVELARFP AIEGKTWNHP VVIGSKLYLR NAEMAACYEL ALDHLPEQQS
QSVVQQGN
|
|---|
| |