Gene Plim_3980 details

Gene Information

• Locus tag: Plim_3980
• ID: 9140700
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 5104183
• End bp: 5106321
• Gene Length: 2139 bp
• Protein Length: 712 aa
• Translation table: 11
• GC content: 52%
• Product: glycogen debranching enzyme GlgX
• Protein accession: YP_003631990
• Protein GI: 296124212

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.524127
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAGTCT GGGCAGGTCG ACCTTATCCA CTGGGAGCTA ACTGGGATGG TGCGGGAGTT 
AACTTTGCGC TCTTCTCCGA GAATGCCACC AAGGTGGAAC TCTGCCTGTT CGATTCCGGA 
GATTCTCTGA GTGAATCCAG CCGCATTGAA CTTCCTGAAC AGACAGATCA GGTCTGGCAT 
GGCTATTTTC CAGAACTTCG CCCGGGCCAG CTTTATGGCT ACCGTGTGTA CGGCCCCTAC 
GACCCTGCAC ATGGCATGCG GTTTAATTCG AATAAACTCT TGCTCGATCC TTATGCAAAA 
GCGATTGGAC GCGATCTTTA CTGGCATGAC TCCGTCTTTG GTTATGAGGT CGGCAGTAGA 
AATGAAGATC TCAGTTTCGA TGCTCGCGAC AGCGCTCCTT ATGCTCCTTT AGCTCTTGTG 
GTGGAAGAGG CATATACCTG GGGTGATGAC CGTTCACCTC GCACGCCATG GCATAACACG 
ATTATCTACG AACTGCACGT TAAGGGTTTT ACTCAACTGA TGCCGGGAGT TCCTGATAAG 
CTGCGGGGAA CTTATGCAGG GCTGGCTTCT GCCGCTGCGA TTGATCATTT AAAAAAGCTG 
GGAGTCACAG CCGTTGAGCT GATGCCGATC CATCATCATG TCGATGAGCA TGGATTGCAT 
TTGCGTGGCA AGACTAACTA CTGGGGATAC AATACACTCG CTTATTTCGC CCCTAGTGTT 
CGATTCAGTT CAGTCAGGCA CCCGTTGTTT GCCGCTCATG AATTCAAGTC GATGGTGCGG 
ACGCTGCATG CCTCCGGGAT CGAAGTGATT CTCGACGTCG TCTACAACCA TACGGCTGAA 
GGCAATCAGC TCGGGCCGAC ACTCTCTTTA CGCGGGATTG ATAACACCGC TTATTATCGA 
TTAATGGGAG ATAACGGCCG CTACTATATG GATTTCTCCG GTTGTGGTAA TACTCTAAAT 
ATGCGTCATC CCCGCGTGCT GCAACTGGTC ATGGACAGCC TGCGCTACTG GGTGACAGAA 
ATGCATGTCG ATGGTTTTCG CTTTGACCTG GCGAGTGCTT TAGCCCGTGA ACTCTACGAA 
GTCGATAAGC TGGGAGCCTT CTTTGATATC ATTCATCAGG ATCCCGTGCT TTCCCGGGTG 
AAATTGATTG CTGAGCCCTG GGATGTTGGC CCGGGCGGAT ATCAGGTCGG CAACTTCCCG 
ACTGGCTGGA CCGAGTGGAA CGGGAAGTAC CGCGATTGCA TGCGACGTTT CTGGCGTGGC 
GATGGTGGTA CGATTGGTGA GACAGCCACC CGGCTCACCG GGTCAAGCGA TCTGTATGCC 
CACAGTGGAC GCAGACCCTA TGCCAGCGTG AATTTTATCA CCTGTCACGA TGGCTTCACC 
CTACACGACC TTGTTTCGTA TGAACACAAA CATAACGAGG CCAATGGCGA AGATAATCGT 
GACGGTGCGA ACGATAATCA CAGTTCTGGT TACGGCGCTG AAGGCGAGAC GACCGATCCT 
GCCATCAATC GCGTTCGTAT GCGGCAAATG AGAAATTTGT TGGGGACGCT ACTGTTATCG 
CAAGGCGTTC CCATGATCTA CTCCGGCGAC GAAATCGGTC AGACCCAAAG AGGAAACAAC 
AACGCTTATT GTCATGACAA TTCGCTTTCG TGGGTTGATT GGAGTTTGCT GGAGAAGGAG 
AAAGACTGGT TCGAGTTTGT TCGCAAACTC ATCAAGATTC GAAAATCTCA GCCCGCACTC 
AGACGCCGGC GATTCTTCTC GGGGCAAGGG ATTCGTGGCG AGAATGTGAA AGATGTTTAC 
TGGCTCTCGA GCGAAGGCCA CGAAATCTCG GGGGATTACT GGAACCACGA CTCTGTGAGA 
TGTTTTGGCA TGCTGATGGC GGGCGATGTG GAAGAGTTCG ACGAAGTGGG GAATGCCATT 
CGAGGCGATA ATTTACTGGT GCTATTCAAT GCCGGGACGA CGCCTGTTTC CTTCCAGTAT 
CCTGTGGCAG GGCCGGCAGG CCCGAGTATG GATCTCATGA TTGATACGGC CCGCCCACAT 
GCAGTCCATG TCGCTTTTGA TGCGGTTCAT CCTTATCCGC TGGAAGATCG ATCGCTGGCT 
CTGTTCCGCT GGAAACCCGC CACGCCAGAG ATTTCGTAG 

 

Protein sequence

MRVWAGRPYP LGANWDGAGV NFALFSENAT KVELCLFDSG DSLSESSRIE LPEQTDQVWH 
GYFPELRPGQ LYGYRVYGPY DPAHGMRFNS NKLLLDPYAK AIGRDLYWHD SVFGYEVGSR 
NEDLSFDARD SAPYAPLALV VEEAYTWGDD RSPRTPWHNT IIYELHVKGF TQLMPGVPDK 
LRGTYAGLAS AAAIDHLKKL GVTAVELMPI HHHVDEHGLH LRGKTNYWGY NTLAYFAPSV 
RFSSVRHPLF AAHEFKSMVR TLHASGIEVI LDVVYNHTAE GNQLGPTLSL RGIDNTAYYR 
LMGDNGRYYM DFSGCGNTLN MRHPRVLQLV MDSLRYWVTE MHVDGFRFDL ASALARELYE 
VDKLGAFFDI IHQDPVLSRV KLIAEPWDVG PGGYQVGNFP TGWTEWNGKY RDCMRRFWRG 
DGGTIGETAT RLTGSSDLYA HSGRRPYASV NFITCHDGFT LHDLVSYEHK HNEANGEDNR 
DGANDNHSSG YGAEGETTDP AINRVRMRQM RNLLGTLLLS QGVPMIYSGD EIGQTQRGNN 
NAYCHDNSLS WVDWSLLEKE KDWFEFVRKL IKIRKSQPAL RRRRFFSGQG IRGENVKDVY 
WLSSEGHEIS GDYWNHDSVR CFGMLMAGDV EEFDEVGNAI RGDNLLVLFN AGTTPVSFQY 
PVAGPAGPSM DLMIDTARPH AVHVAFDAVH PYPLEDRSLA LFRWKPATPE IS