| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3870 |
|---|
| Symbol | |
|---|
| ID | 9140588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 4976905 |
|---|
| End bp | 4978413 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | proton-translocating NADH-quinone oxidoreductase, chain N |
|---|
| Protein accession | YP_003631881 |
|---|
| Protein GI | 296124103 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGC CAGATGCCGC AATGATTTCT TCAGTGACCA GTGCTGCGGG AAAGGTTATT
CCTGAACTGG TGTTGCTGGG GACGGTCTGC ATCAATTTTC TGGTGGGCCC GTTTCTGGTG
ACACCCAGTG GTCGCGCTCT TCCAGGGCTC AGGCATCGCT GGGGTGGTAT TGCCATCGCA
GCGATTTGCA CAGCCCTTTA TCTCTGGTGG ACAGGCTCAA CAGAAGTCGT CACCACCGGG
CCTTTTCGCG TCGATAACAT TGTCTGGTAT GTGCGGGGCG TCATGCTGAT TGCCGCCCTG
CTGCTGGTGC TGGTCAACTG GTCTCAGATT GAAGATGGTA AAGCTGCCGA GAGCCATGCC
TGCCTGCTGG CCATCACTGC GGGTGTCAAC CTCGTGGCAC TGGCCAACGA TCTCACCACG
TTATTTCTGG CACTCGAACT GATCAGTATT CCGACTTATC TGTTCTTGTT TTTGCCTCGA
AAAGATGCTG CTACACAGGA GGCGGGTGTC AAATACTTCC TGCTCAGTGT CTTCTCATCA
GCCATTATGC TTTATGGCTT CAGCCTGATT TACGGCATGG CCGGAACAAC CGATCTGCCG
ACCATCCAAA CAGCGCTCGC CAACAGTAAT CAAACACCAG TGCTGGCCAT CCTGGGGATG
GTCTTCGTGG TCGCGGGATT GGCCTTCCGT CTGACAGCCG TCCCCTTCCA CTTTTACGCA
CCCGATGTGT TCCAAGGTTC CGCTGCCAGT GGTGCTGCCC TGCTCTCGTT TGTCCCGAAG
CTCGCCGGGT TTATCGCACT GATTCGCCTG TTGGAACCTG TTGTCGATGC TGCTCCGGGC
CTGCTGCTGG CTGATGTCAT GCTCCCGATG CTCTGGTGGC TCTCGGTGAT CACGATGTTT
GTCGGGAACT TCCTGGGGAT TCTGCAAAAC GATCTGCGCC GGATGCTCGC CTATTCGGGT
GTTGCTCATG TGGGTTACAT GCTGGTTGGT CTCAATGTCG GGCATCACAC GACATCGGTT
CCGGATGGTA TTGAAGCCCT GCTCTTTTAT CTCGCAGTCT ATGGCTTGAT GACCATCGGT
GCTTTCGCCG TGCTGATTGC AGCCGAACGA GATAACAAAC CGCTCGAAAC GTTGGATCAA
CTCGCCGGAC TCCACCGTGT CAGGCCAGGT CTGGCTCTGA TGCTGATGGT CTTCATGTTC
AGCCTCGCGG GGATGCCTCC AACCGCAGGG TTTCTGGCCA AATTGAATCT CTTCTTTGCG
GCCTGGGCAC AGGGAGATGT TTCCAATCGC TGGCTGGCTC TCTTCATGGT CATCAACGCC
GCCATGGGTT CGTGGTACTA TCTGCGGGTT GTCGGAGCTA TGTATCTGCG TGAGCCACTT
GACGAGCATC ATGGCTCACA CGCGCCGGCC CCCATCATCG CTTCTGTCGC CTGTACGGCT
ATGGTGATCA CACTCTTTTT TGTGCCAACC TGGCTCTGGA CCATGGTGCA GACCGTCCGC
AGCAGTTAG
|
|---|
| Protein sequence | MSQPDAAMIS SVTSAAGKVI PELVLLGTVC INFLVGPFLV TPSGRALPGL RHRWGGIAIA
AICTALYLWW TGSTEVVTTG PFRVDNIVWY VRGVMLIAAL LLVLVNWSQI EDGKAAESHA
CLLAITAGVN LVALANDLTT LFLALELISI PTYLFLFLPR KDAATQEAGV KYFLLSVFSS
AIMLYGFSLI YGMAGTTDLP TIQTALANSN QTPVLAILGM VFVVAGLAFR LTAVPFHFYA
PDVFQGSAAS GAALLSFVPK LAGFIALIRL LEPVVDAAPG LLLADVMLPM LWWLSVITMF
VGNFLGILQN DLRRMLAYSG VAHVGYMLVG LNVGHHTTSV PDGIEALLFY LAVYGLMTIG
AFAVLIAAER DNKPLETLDQ LAGLHRVRPG LALMLMVFMF SLAGMPPTAG FLAKLNLFFA
AWAQGDVSNR WLALFMVINA AMGSWYYLRV VGAMYLREPL DEHHGSHAPA PIIASVACTA
MVITLFFVPT WLWTMVQTVR SS
|
|---|
| |