Gene Plim_3577 details

Gene Information

• Locus tag: Plim_3577
• ID: 9140295
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 4607581
• End bp: 4608147
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 56%
• Product: RNA polymerase sigma factor, sigma-70 family
• Protein accession: YP_003631589
• Protein GI: 296123811

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCAAGTCC CGCTTTTAAC CCGCATTGCC AACGGTGATA CCGGAGCGGT TGATGAATGT 
ATCGACCGCT ATGGTGGGCT CGTGTGGTCG CTCGCCCGCC GACTCTCCTC TTCATTAGCT 
GATGCTGAAG ACGCCGTTCA GGAAGTCTTC GTGGACTTGT GGAAGAATGC GGATCGTTAT 
CGCGGGGAGA TTGCTGGTGA GGCGACCTTT GTGGCAATGA TAGCGCGGCG GCGTTTGATT 
GATCGGCTCC GCAAGTCCGG ACGCGAGTTG GAATCACGAC CGATCGATGA GCTTGCTTTG 
CAACATGCGG CTCCCCTGCA GACTTCCCCC GTAGAATTGG CGGAAGAAGT AGCCCAAGCT 
GCGGCTTGTC TGGAGAGGCT GCGAAAAGAT GAACGGAAAG TGCTGGAACT CTCGATCTAT 
CATGGCTTGC CGCAAACGCG AATCGCCAAC CAAACGGGGC TGGCACTGGG CACAGTGAAA 
ACCATTGCAC GACGCGGGTT GTTACAACTC CGAGTTTGCA TGCAAGTCCG CAACCAGCGA 
CGTGCGAATG AAGTTGAGGT CGTATGA 

 

Protein sequence

MQVPLLTRIA NGDTGAVDEC IDRYGGLVWS LARRLSSSLA DAEDAVQEVF VDLWKNADRY 
RGEIAGEATF VAMIARRRLI DRLRKSGREL ESRPIDELAL QHAAPLQTSP VELAEEVAQA 
AACLERLRKD ERKVLELSIY HGLPQTRIAN QTGLALGTVK TIARRGLLQL RVCMQVRNQR 
RANEVEVV