Gene Plim_3539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_3539 
Symbol 
ID9140257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp4568504 
End bp4571122 
Gene Length2619 bp 
Protein Length872 aa 
Translation table11 
GC content56% 
IMG OID 
ProductSNF2-related protein 
Protein accessionYP_003631551 
Protein GI296123773 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCGCG GTCAACGACT GGCAGAAACG AATCCGGAAT TTATCCACAG GCTGGCCAGT 
CTGACTCTGG AAGAGGCCCG GCAGATGCTG GGCCCTCAAG GCGATGCCCT GCTGAAGGAG
GTTGAAACAG AACCTTTCGA CGGTGAGCAG GCTTATCTCG CGGATGGTTT GTTCCGCGTG
ATGATTCCTC AACGAAAAAA TGATGGCAAA GCTTCCCGCC GCAAGGTGGT CGTGGCTGTC
CGGCCTGATC GCAGACAACC TTCTGGCCTG GCACTTTCCT GCACAGCGTG CAGCGATGGT
TGTACCCATC AGGCATTAGC CCTGCACTAC CTTCTCGCTT ACAAAGTCGA ACTGGGGCTC
ATGCCCCCGA CTGAAGAAGC GTTGCTGCAA CTGGCACCGG AACCAAGTCC CGAAGAGTTG
CAGAATCAGG CGATTTCGGA TCGTCGTGAG CGCGCCCGAC TGGAATCGAT GGAGATTCGC
CCCCTCGCCC CGGATGTTGT CTGGAGTGAT TATCTGGTGA CCAGCCGCAA AAGCGGGCGG
AGCTATCGTG TCGCCCTTCG CGGGATGGAA CCGGGAGAAT CGTATTGCAG TTGCCCCGAC
TTTCGCGCCA ATACGTTAGG CCTGTGTAAG CATCTGCTTC GAGTCCAGGA ACATGTGAAG
CGAACTTACT CAGCCGAAGC CCGGTCGAAG AAGTTTGTTC CGGAAGAGAT TGCTGTCCAT
TTGACGTATG GCGAGCTGGT CGAAGTTCGC TTGCTGATCC CTGAAAACTT ACCAGTCGAG
ATTGCCCCGT TACTGGAGTT GTACCGTGAT CGTGCGGTGA CCGATTTGAG CCATCTGGTG
CATACTCTCG CGAAGGTTCG CATGGCTCAG GTGCCCGTGG TGATTTACCC GGATGCCGAA
GAATTTCTGC AGCAGGAGTT TGATCGCCGC CGGATGAAAG CGATGACGGA ATCGCTAGGT
CATGACGCGG AAAATCACCC CTGGCGGACG GAATTACTCA CCACACCTTT ACTGGGATAT
CAGTTGGAAG GGGCCGCGTT TCTCGCCTGT GCAGGCCGCG CCATCCTCGC CGACGAAATG
GGGCTGGGGA AAACCATTCA GGCACTGGCG GCAATCGAGA TTCTCTTTCG AGAACTCGAT
ATCTCGAAGG TGCTCGTCGT TTGCCCGGCT TCTGTCAAAT CGCAGTGGCG AAATGAAATT
TTGAAGTTCA CCACGCATTC CGTGCAACTG GTGGGTGGCT CGATAGAAAC CCGCCACGAG
CAATATGGGG CAGCTCCGTT CACGATCTGC AATTACGAGC AGGTGCTGAA AGATCATGTC
AGCATTGCTG CCAAACGCTG GGATGTCGTG ATTCTCGATG AAGGACAGCG CATTCGTAAT
TGGGAAACCC GCACTGCCCA GGCCATCAAA AGTTTGCGAT CTCGCTTTGC CTTCGTACTG
ACGGGAACAC CGCTGGAGAA CAAACTCGAC GACCTCTATT CGATCATGCA GTTCATTGAT
GATCGCCGAC TCTCACCCGC CTTTCGATTT TTCCCCAGGC ACCGCATGAT CGATCAGAAG
GGGCGATTTG TCGGCTATCG CAATCTTGAC GAACTGCGCG AGAGGCTGGC ACCGGTCTTT
CTGCGTAGAA CAAGATCTCA GGTTCAACAG CAGTTGCCTC CCTGTACTGT GCATCAGGTG
CTGATCGCCC CGACATCGGC TCAAAGGCAG GTGCATGCCC GGCATTTTGC CCAGGTTTCG
AGAATTGCCC GCAAGCCGCA CCTCCATGAA CTTGACCTGA TGCTCTTACG GAAAGAGCTG
TTGTATTGCC GACTGGCGGC GAACAGCCCG GAACTCGTCG ATGATCAAAT CGTGGGAGAA
TCATCGAAAC TTGACCGACT GAGCGAGATG TTCGATGAGA TGTTTGAAGG GCACTTTGAG
AAAGCGATTG TCTTTTCCGA ATGGACACGC ATGCTCGATC TCATTGAACC ATTACTCGAC
AGCCGCAATC TGCCGTATGT CAGGATCGAT GGACAGGTCT CGCAGCGTGA ACGGGCAGCA
TCTGTCTCGC AGTTTGAGGA CGATCCCGGA ACCCGCGTGC TGCTGGCCAG CAATGCGGCT
GCGACGGGTC TCAATCTGCA GGCCGCCAGC ATTGTGATCA ATGTCGATCT CCCCTGGAAC
CCGGCAATTC TGGAGCAGCG CATCGCGCGG GCGCATCGCA TGGGACAGGA AAAACCGGTT
CAGGTCTATG TGCTCGTGAC GGAAGAGACG TTTGAAGAGC GGCTGCTCAA GACACTGGAA
GGGAAAGAAC AACTCGCTCG TGCTGTGCTT GATGAAGGTG CCGAGATCAA GGAGGTCTGG
CTGACCAGTG GCAGCGACAG TTTGAGGGCT GAATTGCAAG GCCTTCTGGA GCCTGATCCC
GCGACGACCG GTGAACGACA GCCAACGTTT CCCTCTGCGG GAATGCTCGT TGATCAGGCA
ACATCAGCCC AGGTGCACGC CATTCGCGAC CGGTTGAAGC ATTATCTGGA ACGCGATCCC
CAGGGCCGCT GGCAATTACG CATTCCTCTC GCCAGTGAAA ACGCCCTGGA TGAACTCGCG
AAAACATTCC AGCAATGGGT GGGCGAGGCG ATTGATTAA
 
Protein sequence
MTRGQRLAET NPEFIHRLAS LTLEEARQML GPQGDALLKE VETEPFDGEQ AYLADGLFRV 
MIPQRKNDGK ASRRKVVVAV RPDRRQPSGL ALSCTACSDG CTHQALALHY LLAYKVELGL
MPPTEEALLQ LAPEPSPEEL QNQAISDRRE RARLESMEIR PLAPDVVWSD YLVTSRKSGR
SYRVALRGME PGESYCSCPD FRANTLGLCK HLLRVQEHVK RTYSAEARSK KFVPEEIAVH
LTYGELVEVR LLIPENLPVE IAPLLELYRD RAVTDLSHLV HTLAKVRMAQ VPVVIYPDAE
EFLQQEFDRR RMKAMTESLG HDAENHPWRT ELLTTPLLGY QLEGAAFLAC AGRAILADEM
GLGKTIQALA AIEILFRELD ISKVLVVCPA SVKSQWRNEI LKFTTHSVQL VGGSIETRHE
QYGAAPFTIC NYEQVLKDHV SIAAKRWDVV ILDEGQRIRN WETRTAQAIK SLRSRFAFVL
TGTPLENKLD DLYSIMQFID DRRLSPAFRF FPRHRMIDQK GRFVGYRNLD ELRERLAPVF
LRRTRSQVQQ QLPPCTVHQV LIAPTSAQRQ VHARHFAQVS RIARKPHLHE LDLMLLRKEL
LYCRLAANSP ELVDDQIVGE SSKLDRLSEM FDEMFEGHFE KAIVFSEWTR MLDLIEPLLD
SRNLPYVRID GQVSQRERAA SVSQFEDDPG TRVLLASNAA ATGLNLQAAS IVINVDLPWN
PAILEQRIAR AHRMGQEKPV QVYVLVTEET FEERLLKTLE GKEQLARAVL DEGAEIKEVW
LTSGSDSLRA ELQGLLEPDP ATTGERQPTF PSAGMLVDQA TSAQVHAIRD RLKHYLERDP
QGRWQLRIPL ASENALDELA KTFQQWVGEA ID