Gene Plim_3319 details

Gene Information

• Locus tag: Plim_3319
• ID: 9140034
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 4289770
• End bp: 4293132
• Gene Length: 3363 bp
• Protein Length: 1120 aa
• Translation table: 11
• GC content: 57%
• Product: Uncharacterized photosystem II stability/assembly factor-like protein
• Protein accession: YP_003631331
• Protein GI: 296123553

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTCTG TTCGTTTGCC TGCATTCCAT GATCAACCTT CGATTTTCCG CTGGCCATTG 
ACCCGCATTG TCATGGGCTA TTGCGTGGCG ATGGTCGGGA TGAGCCTCTG CCCGGCAGTA 
CTGTTAAAAT CTCTCGTAGC GAGTGAGCCT GTACTTTCAG CAGTCACTCC CCTGCAGGAT 
GATGCGACGT TAAGGGCGGT CTGCACTGTA GGCAAAAAAC ATATTTTCGC GGTGGGTGAT 
CGTGGCGTGG TCTGGATCTC GAATGATGCC GGAGCCACGT GGCGGTTCTC ACTGGCTCAG 
AGTTCATTGG CTCAGAGTTC GCATGCCCAG GGAACGGGTT CACCCAGGCT GATTCATTTG 
AAGTGTGCCC AATTCGTGAC AGACCAGATC GGCTGGGTGG GCGGATATGT GGGTGAACCT 
TCCGATCATC ATCTGCAAGG TGTTCTGCTC TCGACCACAG ATGGCGGCAT GACCTGGCAG 
GAACTGGGGG CTGGTCAGCT TCCGCCTGTG CAGCATGTGC AATTTTTTGA TATGGATCAG 
GCCGCAGTGG TCGTCGCTGC CGACGATGAT GTCCCCACGG GTGTGATGCG GACTGTCGAT 
GGTGGCACCA CCTGGCACCG GTTAGCTGGT CAACGGCAGG GCCACTGGAA AACAGCCGCC 
TGGTTCAGCC CGGAAATGGG GCTGGTTGCG GGGAGTGACC TGAAGATTTC ACTGGTGGGT 
GATGAGCAGC TGTTGCCTTC CAAGATGCCG GGTGGCAGCT TGCGAACACT CCGCGGAGCT 
TTCGTAACGA AAGATGAACG CGGCTGGCTG GTGGGTGATG GTGCCACCGT GTTGACAACC 
ACGAATGGTG GGATTGTCTG GGATCTTCCT CAGGGTGAGT TTCCGCCAGC AGCACGCAGG 
TTAATGGATT TTCGAGGCGT ACATGGTCTG GGTGAGCATG TCTGGATTGT GGGTTCTCCC 
GGCTCTGTGA TCTGGCATTC CTCCAATGCA GGTCAAGCTT GGGAGAACAT CAGCACGGGC 
GAGACGGCTC CTTTAGAAGC CGTCCGTTTT GTGCCGACGA CGGCCGATCA GTTGGAACAT 
GCCGCCACGG GCTATGCCGT CGGACATCTC GGGTTGATTC TCAAGACGAC CGATTCGGGC 
AAAACCTGGA AGGCCTTGCG GGGCGGTGGT CGCCGAGCCG CACTGACGAT CATGCCCGCT 
CGCACAGAAC GCATCTCTTC GTGGGCATTG GCGAAAGCCA GTGGTGAGCA AGGGTATCGA 
TCGAGTGTGA TTCTGCTTTC GGCAGGACTT GATGCAAAAC TGGAGCATGA AGAGGGGCTG 
ATTCACAGTG CCAGCAATGA AGAACTCCGG CGGGCAGGCG TGCTGCTGGC CGGTGGTAAC 
GCACTGGAAG AAGGCTGGGC CTTCCCACTT TCGACACCAG GCATGCAGCA CAATCGCGAC 
GCTCTCTTTC GTGACTGGAT GCTCAAGACA GAAAACAAAC TGCCCGAGAT GTTGCTGGGA 
CAGATTGTGC GTCATCTGCG AACCTGGCGG CCCGACGTGG TGATGCTGGA TCAACCGGCG 
GCTGATGATG CGGTCGCTCA GTTGCTGTTT GCAGCGATGT GCCGGGCCAT TCCTTTGGCG 
GCTGACGCCA CGCGATTGTT CGAGCAACAG GAAGTTGTCG GGCTCGCACC GTGGTCTGTC 
TCGCGGGTTC TTCTGCGATT GCCGGATGGC AGTGTGGGTG ATGCTCAACT GGAAGCGTTT 
GAGTTTTTGC CGCGAACGGG TGTCTCAGTC AAAACAGCAG CGGCGAGAGC CGATGGGCTG 
TTAGAGATTC AAAGGCAAGG TCTCCTGCAG CGCGAGGCTT ATCGGCGACT TGACCCGGCT 
CAGCTTGTGG GTGGCATTGG TTCGTTGCCA GCCGTCAGTG CACAGGCTTC GCAGGATCTG 
TTCGCGGGGC TGTCGATATC CCCTGGGACG GCGGCTCGTC GAGGCTTACT CCCTGTCGAT 
GATCAGATTC TGGCTGAGCG CATGAAGGCA GCCGCCAAGC TGCGGAATGT CGAGTCGTTC 
ACTGGCCAGC AACTGGGTGA TCCCCGTGTG GCGGGCCAGA TGCTGGCACA GGTGGGGCCC 
ATCCTCGCTG GTCTTGATCA GGCTCAGGGA GCCGCATTTC TGGCACAACT GGCCCGCGAT 
TATCGACAGC ATGATCAGTA CGACCTGCTC GAGCAGACTC AACTCGAATT GATTCGCAGA 
TACCCCACTT CGCCAGAACG GACTTCAGCA TTGCGATGGC TGGTCGCTTA CTGGACGAGT 
GGAGAAATGA TGTACCAGCT CTCACGAAAA GAAGGTTCTC TGACCAGTGT GGTGACAGCC 
GATACAAGGC CCACGATTCG CCGGGTGGGT GCCAATGGTG AAGAACTCGC GAATGACGAT 
GGTTCGTATA GTTCGCGGGA TCGCTCGCCC ATTGTGCAGG CTCGGGCAGA AGGTCGAATC 
CAGTCGGGTC GGGGAGATTA TCAGAACGAT CAGCTCAAAG GACGACAAAA GCGTGCTGCA 
GAACTTCTGG CAATGCTGGA GCTGCAGGAA CGGAGGGTGT TTCAATCCAG TGAGGTTCAG 
TTTCCACTGG CGGCACTGAA AAGACATCGA GGATCCTTTG GAGAAGCCGA TAGTATTTAT 
CGCTCGCTGT TGATTCGCCA GCAGGCCCAG AGTGCAGAAG CGTCGGCCAC AATCTCGACA 
GATCCGATTC ATCAGATTGC TGCCATGGAG ATGTGGATCA CGGCGGCGAC GGGAGCATCG 
CCGGGAACAA TTGCGACCTC ACAGTATGTT TCGCATAAGC CCGTGCTGGA TGGACTCCTT 
TCCGATGATT GCTGGCAAGT GGCCAAGGAT CTGTCATTAC AGAAGCCCGG GTTATCGAAC 
CTGGAACTGG CGGATCAGCC TCGCGATTTT GTGATGATCG CTCACGATCG GGAATTTCTT 
TATCTGGCGG GGAAATGTCA TCGACATCCC GGGCATCGAG CGAACCCGGT CGAGACGAGT 
GGCCGGACGT ATGATGCTCC TTTAGAAGAA CTCGACCGGG TGAGGATTTC GCTCGATATC 
GACCGCGATT ATGTCTCGGC TTATCACTTT GAGATTTCGG AAACAGGTGC GGTGAGTGAG 
AGTTGCTGGG AGCGGGTGCG CTGGAATCCG GCCTGGTTTG TGGCCGTCGA TGGCGATGCT 
GAAGGCTGGA GATTTGAAGC CGCCATTGCG TGGAGCGAAC TGGCTGCGCA GGCTCCGGCG 
ACCAATCATG TCTATGCCGC CAAAGCGATG CGTATTCTCC CAGCCATTGA AACCCGCCAC 
TGGCCCCCCG CGACGACCGA TTCCTCGGCC AATGTGCCGA TTGGCCTCAT TCGATTTGAG 
TAA 

 

Protein sequence

MKSVRLPAFH DQPSIFRWPL TRIVMGYCVA MVGMSLCPAV LLKSLVASEP VLSAVTPLQD 
DATLRAVCTV GKKHIFAVGD RGVVWISNDA GATWRFSLAQ SSLAQSSHAQ GTGSPRLIHL 
KCAQFVTDQI GWVGGYVGEP SDHHLQGVLL STTDGGMTWQ ELGAGQLPPV QHVQFFDMDQ 
AAVVVAADDD VPTGVMRTVD GGTTWHRLAG QRQGHWKTAA WFSPEMGLVA GSDLKISLVG 
DEQLLPSKMP GGSLRTLRGA FVTKDERGWL VGDGATVLTT TNGGIVWDLP QGEFPPAARR 
LMDFRGVHGL GEHVWIVGSP GSVIWHSSNA GQAWENISTG ETAPLEAVRF VPTTADQLEH 
AATGYAVGHL GLILKTTDSG KTWKALRGGG RRAALTIMPA RTERISSWAL AKASGEQGYR 
SSVILLSAGL DAKLEHEEGL IHSASNEELR RAGVLLAGGN ALEEGWAFPL STPGMQHNRD 
ALFRDWMLKT ENKLPEMLLG QIVRHLRTWR PDVVMLDQPA ADDAVAQLLF AAMCRAIPLA 
ADATRLFEQQ EVVGLAPWSV SRVLLRLPDG SVGDAQLEAF EFLPRTGVSV KTAAARADGL 
LEIQRQGLLQ REAYRRLDPA QLVGGIGSLP AVSAQASQDL FAGLSISPGT AARRGLLPVD 
DQILAERMKA AAKLRNVESF TGQQLGDPRV AGQMLAQVGP ILAGLDQAQG AAFLAQLARD 
YRQHDQYDLL EQTQLELIRR YPTSPERTSA LRWLVAYWTS GEMMYQLSRK EGSLTSVVTA 
DTRPTIRRVG ANGEELANDD GSYSSRDRSP IVQARAEGRI QSGRGDYQND QLKGRQKRAA 
ELLAMLELQE RRVFQSSEVQ FPLAALKRHR GSFGEADSIY RSLLIRQQAQ SAEASATIST 
DPIHQIAAME MWITAATGAS PGTIATSQYV SHKPVLDGLL SDDCWQVAKD LSLQKPGLSN 
LELADQPRDF VMIAHDREFL YLAGKCHRHP GHRANPVETS GRTYDAPLEE LDRVRISLDI 
DRDYVSAYHF EISETGAVSE SCWERVRWNP AWFVAVDGDA EGWRFEAAIA WSELAAQAPA 
TNHVYAAKAM RILPAIETRH WPPATTDSSA NVPIGLIRFE