| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3276 |
|---|
| Symbol | |
|---|
| ID | 9139991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 4229986 |
|---|
| End bp | 4231278 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_003631288 |
|---|
| Protein GI | 296123510 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGACCG CTCCGCTGCA TGAGTTTCCT ACGCCTGTGC GTATTGCCAG ACAGATCCGC
CTGTTTGCGA GGCAATTTCC AGTCACACTC AGTTTCATGC TGTTGTCGGC GATACTGTTT
CTGCTCACCT TCATCGCGGG AGGGGAATCG ACCGAGAGCC AATCGAGAAA CTGGGGTGCG
ATTTCGACAC TCAGTTTCTT TCGGGAAGTC GAACCACAGA TCTGGAAAAA TGTCACCCCC
GAGTTGTATG GGCCCTTTGA ATTATGGAAG GGAGAATGGT GGCGATTGCT GGTGACAGGG
TTTCATCATG GAGATCCTGT CCACCTCACC TTGAATCTGA TGGTACTGGC ATTTCTGGGC
CCGCTGGTGG AACAACGCCT GGGCAAGATT TCCTTCAGCC TGTTCTTCGT GTTCTCGATC
ATCTTTTCAG TCTGTGCCGA ACTCTTCTGG GGTGAGAATG TGGTCGGGAT TTCGGGAGGT
CTCTTTGCAC TGCTTGGTTA TCTCGTGATC GCACGACTTC GAGACGAAGA ACTCGCCCGG
CAGCTCCCCG ATGAACGCTG GATCTTTTAC CTGCTGATGG CTGCGGTGAT GGCCGGCTTA
TCGGCTCTGG AAATCCTGAA CATCGGAAAT ACCGCCCATG TCAGCGGCCT GCTGGTGGGA
GTCGCCTGGG CTGTCATCAA TCCCTGGTCC TGGCCCTGGC GAATGGTCTT CATAACAGCC
GCATTCGTGC TGCTCGTGGC TGCCGGGTAT GGAGCCGTTC ATCCATTTTG GCTGGGCCGG
TATCACTGGT ATCTGTCGCG ACTCGACAAA CCCGATTCGG CAGCACGCAT ACAATTGCTG
CGAAGAGCCA TCTCGTATGA CCCCCGCCTT CCAGGTGCAT GGATGGAACT GGCCGAACGA
CAACAGTCTT CGCAACAGCC CATGGATGCG TGGAAAACTC TTCTCGAAGG GATGCTGATC
AATCGCAACA GTCTCGAACT GTTAGATGCC ACCAGTCAGC AGTGGGGTTT GTTGAAACGA
TTGCATCTGG AGCCGTTAGC CACTGAGATC GCAGTGCAGA CACTCGGCGA AGATTCGTCC
ATCTGGCTCA AGCAGTTTGA TGAACATCTG GCACGAAACA GTCTTGGCCC ATCCATGGAA
GATGATCTGC AGGATTGGTC TCAGCAAAAC CCCGATTCAT GGATGAGATC TCCCCTGATT
GAAACGGTTC GGCCACGATT TGTCGAACCA CACAAACCCA GCGGATTACC AGACGATTCG
CCAAACTCTG CAATCGAAGG AACAACACTG TAA
|
|---|
| Protein sequence | MTTAPLHEFP TPVRIARQIR LFARQFPVTL SFMLLSAILF LLTFIAGGES TESQSRNWGA
ISTLSFFREV EPQIWKNVTP ELYGPFELWK GEWWRLLVTG FHHGDPVHLT LNLMVLAFLG
PLVEQRLGKI SFSLFFVFSI IFSVCAELFW GENVVGISGG LFALLGYLVI ARLRDEELAR
QLPDERWIFY LLMAAVMAGL SALEILNIGN TAHVSGLLVG VAWAVINPWS WPWRMVFITA
AFVLLVAAGY GAVHPFWLGR YHWYLSRLDK PDSAARIQLL RRAISYDPRL PGAWMELAER
QQSSQQPMDA WKTLLEGMLI NRNSLELLDA TSQQWGLLKR LHLEPLATEI AVQTLGEDSS
IWLKQFDEHL ARNSLGPSME DDLQDWSQQN PDSWMRSPLI ETVRPRFVEP HKPSGLPDDS
PNSAIEGTTL
|
|---|
| |