Gene Plim_3077 details

Gene Information

• Locus tag: Plim_3077
• ID: 9139789
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 3979304
• End bp: 3981424
• Gene Length: 2121 bp
• Protein Length: 706 aa
• Translation table: 11
• GC content: 56%
• Product: DEAD/DEAH box helicase domain protein
• Protein accession: YP_003631094
• Protein GI: 296123316

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.711638
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAAGCG TTTTTTCAAG ACTGGCTCCG CGACTCCAGC AGGCCATCGT TGCCCGACTT 
GGCTGGTCCA GCCTACGGCC TGTCCAGGAA CTGGCAGGTG AAGCGCTACT AAGCGGCAGA 
AACGCAGTGA TTCTGGCCCC GACTGCGGGG GGGAAGACCG AGGCGTCGAT GTTTCCGACG 
CTGTCGAATC TGGTCGATCA ACAGCCGGTC GGAGTCGGAG CAATCTACGT CGCTCCGATC 
AAAGCGTTAC TGAACAACCA GGAAGACCGT CTCGGGCTTT ATACCGAGAT GGTCGGACTT 
CGACGTTTTG TGTGGCATGG GGATACCACG ACCAGTGCCC GCAAACAGTT CCTGGACGAT 
CCGGCAGAAC TTCTGATGAC GACTCCGGAA TCATTGGAGG TGATGCTGGT TTCTCAGCGC 
GTGGATGAGC GGGCTCTCTT CGGTGACCTG CGGATGATCG TGATCGACGA AGTGCACGCG 
ATCGCGGGCA CTGACCGTGG CGCGCACCTA ATGAGCGTGA TTGAACGCAT TCGGCGAGTT 
TCCCGCCACG ACATTCAGAG AGCCGGACTC AGTGCGACGG TTGGCAACCC AGCAGCGATT 
CTTGAATGGC TCAAGGGAAC ATCGGAACGT GAGGGAGTCG TCGTTGATCC GCCCAAGAGG 
CCCTCTCGAA GGCAGCTGCT GATCGTCCAT GAGGCCGACC AGACGCAGAT TGCTGTTGCG 
GCGGCGCAGG TTGCCCGAGG TTGCAAGAGC CTGTTCTTCT GCCAGTCCCG GGCCACGACC 
GAGGCTGTGG CGGAAACGAT GCGACGATCC GGAACGACCG TCTTCGTCCA TCACAGCGCT 
GTCTCCAAAG AGGAACGGCT CCTGGCAGAA CAGGAGTTTC ATCACGGATC CGGTGCATGC 
ATTGTCTGCA CGTCAACGCT GGAACTCGGC ATTGACGTTG GTGACCTCGA TAAGGTCTTG 
CAGGCCAACG CACCTGAGAC CGTCGGGTCG TTCCTTCAAC GAATGGGGAG AACTGGCCGT 
AGGGAGGGAC AGGCGGCCAA CACCACCTTC TTTTGCGAGA GCACGGACTC AATATTGCAG 
GCCATCGCCC TGATCGAACT GGCGAAGGCT GGTTGGGTTG AAGATGTTCC GGTGAACCAG 
CGTTGCTGGC CGGTCCTCAT TCATCAGTTG CTGGCGATGT CGCTGGCTGA AAACGGTATT 
CCTACCGACG TGGCTTGGAA ACACCTTTGT GGCGTGCCTG ACTTTCAGCG GATCAGCCGA 
AAGGAGTTCG ATCGGCTGAT TGAGTGGATG ATACAGGATG GCTCATTGCT TCTGATGAGT 
GGCCGACTGA TCCTGGGACC CCAGGCGGAG CGACGATTTG GCCGCCGCAA CTTCATGGAG 
CTATACGCAG TCTTTTCGAG TCCCCAATCG TACAACGTAG AAACGGTCAA CCGGCAGGTC 
ATCGGAACCT TGACTCAGGA TTTCGTTGAT GGGCTGGTTG ATGGCGTGAG TTGTTTCCTT 
CTGGGCGGGC GTGCGTGGGC GGTATTTCAG GTTGTCCATA AAGATCGACT GGTCGTTGTC 
GAGCCAGCCC CGCGAGGACG ACAGCCGACA TGGGGTGGGT ACCTACCCCA ATTTCTGGGG 
TTCCACCTTT GTCAGAAGAT CCTGGAGATA GTCACCGCCG ACGACGAATA CCAATATCTT 
ATGCCACCAG CCGCTGATCT GGTTACTCAA GAACGAAACC GAATGGAGTG CCTGGTTGAG 
CCGATTGTTG GTGGAATCAA CTTCAATAAG GATGGGAATG AGGTCATTTG GCACACATTT 
GCCGGAGGCA GGGTCAATTC GACGATTCGG TATGCGATTG GTGCGCTTCA GCCGACATGG 
ACCATCACAC CTGACAACTT CTCCGTGAGA TTTAGAGACT CGGATATAAC TGAAACAGCC 
TTCAAATCAG TGATCCGAGA ACTGGCATCC ACCGACTTCT GGAACGATGA TTCTGTCTGG 
CAAGAAGTCC GGGCTGCACT GCCGGGTTAT CGCCTCAGCA AGTTCCAACC GTTAATGCCG 
GCGTGTATCG AGCAAGAGGT TCTGTTCGAT TATTTGTTGG ATCGACATCA AACGGCTGAT 
TGGGTCAGGA GGATTTTATG A 

 

Protein sequence

MVSVFSRLAP RLQQAIVARL GWSSLRPVQE LAGEALLSGR NAVILAPTAG GKTEASMFPT 
LSNLVDQQPV GVGAIYVAPI KALLNNQEDR LGLYTEMVGL RRFVWHGDTT TSARKQFLDD 
PAELLMTTPE SLEVMLVSQR VDERALFGDL RMIVIDEVHA IAGTDRGAHL MSVIERIRRV 
SRHDIQRAGL SATVGNPAAI LEWLKGTSER EGVVVDPPKR PSRRQLLIVH EADQTQIAVA 
AAQVARGCKS LFFCQSRATT EAVAETMRRS GTTVFVHHSA VSKEERLLAE QEFHHGSGAC 
IVCTSTLELG IDVGDLDKVL QANAPETVGS FLQRMGRTGR REGQAANTTF FCESTDSILQ 
AIALIELAKA GWVEDVPVNQ RCWPVLIHQL LAMSLAENGI PTDVAWKHLC GVPDFQRISR 
KEFDRLIEWM IQDGSLLLMS GRLILGPQAE RRFGRRNFME LYAVFSSPQS YNVETVNRQV 
IGTLTQDFVD GLVDGVSCFL LGGRAWAVFQ VVHKDRLVVV EPAPRGRQPT WGGYLPQFLG 
FHLCQKILEI VTADDEYQYL MPPAADLVTQ ERNRMECLVE PIVGGINFNK DGNEVIWHTF 
AGGRVNSTIR YAIGALQPTW TITPDNFSVR FRDSDITETA FKSVIRELAS TDFWNDDSVW 
QEVRAALPGY RLSKFQPLMP ACIEQEVLFD YLLDRHQTAD WVRRIL