| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3000 |
|---|
| Symbol | |
|---|
| ID | 9139712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 3881612 |
|---|
| End bp | 3884221 |
|---|
| Gene Length | 2610 bp |
|---|
| Protein Length | 869 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | DEAD/H associated domain protein |
|---|
| Protein accession | YP_003631021 |
|---|
| Protein GI | 296123243 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGC CGCGGCCCGG AATCTCGCGA AAGTCAGCTT CAACGGCGGA GCATCTGGCC
AGCAGTTTCG ATTCAAAATC TGCCCACGGA GCCGATCTTC TGCAGCCGAT GAGAGACTGG
TTCACTTCCC GGGGCTGGCA GCCATTTCCT TTTCAAGAAG AAGTCTGGCA AAACTATCTG
GCGGGTGAGA GTGGTTTAGT TCATGCCACC ACAGGGACTG GAAAAACCTA TGCCGCGTGG
GGAGGCCCAC TTTTACGTGC GCTTCACGAA GAGCAAAAAC TCGTCGATGC GGGCAAAAAA
CCTTCACAGA AAGCACCGGG CCTTAAGGTT TTATGGATTA CGCCACTGCG TGCTCTGGCA
GCCGATACCG AAAATGCATT GCAGGCAGCT GTTCAGGATC TGAACCTCCC GTGGCTGGTG
GAACGCCGGA CCGGTGATAC ATCAGCCACA ACGAGACGTC ATCAGCGCGA ACGATTACCC
ACAGCTCTGA TTACCACGCC CGAAAGCCTC TCACTTCTGC TCGCTCGTGC AGATGCTCAG
GAGCAATTGG CGAACCTGGA ATGTGTGGTC TTCGACGAAT GGCACGAGCT GCTGGGCGGA
AAACGAGGCA CGCAGGCTGA ACTCTGCCTG GCTCGACTGA GAAGCTGGCA ACCTCAGTTG
CAGGTGTGGG GATTATCGGC CACGCTCGGG AATCTTGAGC ATGCCTGTGA TGTCTTGCTG
GGGAGGCCGA CTGGTCAGCG AATGGCTGCG TTTCAGACCA CCGCTTCGCA GGCTTATGTG
GGAAAGATTG TGCATGGCGC CACGAGTAAA TCGTACGCCA TTGATTCCAT GATCCCACCT
GTGATGGAAC GATTCCCCTG GGCTGGCCAT CTGGGGGTTC GTCTGTTGCC ACAGGTCATC
GAAAGGATCG AAGCGGCTCG TTCGACGCTG GTCTTCACCA ATACTCGAGC CCAGACAGAA
CTTTGGTATC AGGCGATTCT GAAGGCTCGG CCCGACTGGG CGGGCGAACT GGCACTGCAT
CACGGTTCAC TCGATCAGGA TGTTCGCCGC TGGGTCGAGC AGGGGTTGCG TGAGGGAAAG
TTAAAGGCTG TGGTCTGCAC TTCATCGCTC GATCTGGGAG TCGATTTTTC ACCTGTTGAT
CAGGTGCTGC AGGTGGGGAG CCCCAAAGGT GTGGCCCGTC TGCTGCAACG AGCTGGGCGG
GCAGGGCATC AACCGGGGGC ATTGAGCCGG GTGGTGTGTG TCCCCACTCA TGCTCTGGAG
CTCGTGGAGT TTGCCGCTGC TCGCGAATCG CTCGAAAAGG GCCATCTGGA GGCGAGGATC
CATCGTTCAA AGCCACTCGA CGTGCTTGTT CAACATGCTG TGACGGTTGC TCTGGGAACG
GGCTTTCGTG CTGAGAATCT ATTGCAGGAA GTCAGACAGT CGTCGGCCTA CCATGATCTG
CAAGCAGACG AATGGGAATG GGTTCTCGAC TTTATCCATC GTGGTGGTGA GGCACTCAGG
GCTTATCCTG ACTATCAACG GGTCAATGTC GTCGATGGCG AGTATCGCGT GACCAGCCAG
AAAGTGGCCC GTCAGCACCG CATGGCGATT GGCACAATTG TGGGAGATGC CAGTCTTTCC
GTGGTGTATC GCAGTGGTGC ACGATTAGGC ACGATCGAGG AATCTTTTGT TTCCAAAATG
AAGCCCGGAG ATCGCTTTAT CTTCTCGGGT AAGCTGCTCG AATTAATTCG TGTCTACGAT
ATGAAGGCTT ATGTCAAACC CGCGACTGGC AAACTCGGGC CAGTACCCCG CTGGATGGGT
GGCCGCATGC CCCTTTCGAC AGAACTTTCC AAAGCTGTGC GTAACAAACT GGACGAAGCA
CGTCGAGGTC TGTTTCTTGG CCCTGAAATG GAAGCTGTGC GGCCAATTCT TGAAGTGCAG
GCTGACTGGT CACTCATACC GGCTATGGGC GAACTGCTGA TCGAGACACT CAAGTCGCGT
GAAGGCTACC ACTATTACTT CTATCCGTTC GAAGGGCGGT TGGTGCACGA AGGTCTGGCC
AGTCTGTTCG CCTATCGACT GGCTCAACGA CTGCCCGTCA CATTCACGAT GGCGATAAAT
GATTATGGCT TTGAACTCCT GGCGACAGAG GCCATTGATG TTGGTAGGGC GATCCAGGAG
GGATTGTTCT CGGAAGATCA ACTCGAGGGA GATATTGAAC AGAGTCTGAA TGCCGTCGAA
ATGGCCAGGC GGCAATTTCG AGAAGTCGCC AGAATTAGTG GGTTGATTTC TCAGGGCTTT
CCCGGTGCGA CCAAATCGAC CAGGCAGCTG CAGGCATCGG CTGGTTTACT GCACGATGTC
TTTACCGAAT ATGATCCCGA CAATCTGCTG CTCAGGCAGG CTCGGCAAGA AGTCCTCGAA
CAGCAACTGG AATCGAATCG ACTGCGGGAA ACATTAGTTC GATTGCAGGG AGCCACCATT
CAGCTTGTGG AACTTCCGCG ATTTACTCCA CTGGCATTTC CACTGATGGT GGACCGTTTG
CGCGAGCGAT TAACCAGTGA AAAGCTCGAA GATCGCATTC GCAAAATGCA GATTCCGCTG
GAGAAAGCCG CTACCTCCCG CCGGAAGTGA
|
|---|
| Protein sequence | MKPPRPGISR KSASTAEHLA SSFDSKSAHG ADLLQPMRDW FTSRGWQPFP FQEEVWQNYL
AGESGLVHAT TGTGKTYAAW GGPLLRALHE EQKLVDAGKK PSQKAPGLKV LWITPLRALA
ADTENALQAA VQDLNLPWLV ERRTGDTSAT TRRHQRERLP TALITTPESL SLLLARADAQ
EQLANLECVV FDEWHELLGG KRGTQAELCL ARLRSWQPQL QVWGLSATLG NLEHACDVLL
GRPTGQRMAA FQTTASQAYV GKIVHGATSK SYAIDSMIPP VMERFPWAGH LGVRLLPQVI
ERIEAARSTL VFTNTRAQTE LWYQAILKAR PDWAGELALH HGSLDQDVRR WVEQGLREGK
LKAVVCTSSL DLGVDFSPVD QVLQVGSPKG VARLLQRAGR AGHQPGALSR VVCVPTHALE
LVEFAAARES LEKGHLEARI HRSKPLDVLV QHAVTVALGT GFRAENLLQE VRQSSAYHDL
QADEWEWVLD FIHRGGEALR AYPDYQRVNV VDGEYRVTSQ KVARQHRMAI GTIVGDASLS
VVYRSGARLG TIEESFVSKM KPGDRFIFSG KLLELIRVYD MKAYVKPATG KLGPVPRWMG
GRMPLSTELS KAVRNKLDEA RRGLFLGPEM EAVRPILEVQ ADWSLIPAMG ELLIETLKSR
EGYHYYFYPF EGRLVHEGLA SLFAYRLAQR LPVTFTMAIN DYGFELLATE AIDVGRAIQE
GLFSEDQLEG DIEQSLNAVE MARRQFREVA RISGLISQGF PGATKSTRQL QASAGLLHDV
FTEYDPDNLL LRQARQEVLE QQLESNRLRE TLVRLQGATI QLVELPRFTP LAFPLMVDRL
RERLTSEKLE DRIRKMQIPL EKAATSRRK
|
|---|
| |