| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_2944 |
|---|
| Symbol | |
|---|
| ID | 9139656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 3808360 |
|---|
| End bp | 3811164 |
|---|
| Gene Length | 2805 bp |
|---|
| Protein Length | 934 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Pyrrolo-quinoline quinone |
|---|
| Protein accession | YP_003630965 |
|---|
| Protein GI | 296123187 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.186402 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCGTG AAAGGTTGAG GCGACTGGTG GAGTATGTCA TGCACGACCA GTTGGGAAAT
CAACTCAATG AATCACCGTC AGAAGGGGCA ACCGGATTGA TCGCACGACA CACCCACAAG
CTTAATATAG CGGTTCATCG ACCGCGATTC GCATGGTTGA CCCGCTCGAC ATGGGCCTTG
CTGTTTACGG TGGCGCCAGT TCTGGGCATG GCCCCGGCAA TCTCTTTTGG ACAAGCGGAG
ACACCGGCTG CGTCCGAAAA GGAAGCAGCC CCTGTTAGTG AGTCGAAGGT CAATCCAAAT
CGGCAGGTTG CCATCAGCCC CCTGGGAGTG ATTCATGCGG GCGACTGGCC GCATTGGCGC
GGGCCGGAGA TGAATGGCAT TTCCCGGGCG AAGAATCTGC CAGCCACGTG GTCTCCTGAT
GGGGAAAATG TGCTCTGGAA GAACGACGAA CTGGCTGGCC GATCGACTCC GATTGTGATG
AATGGCAAGC TCTTCACGCT TGTACGGCAC AAGCCTGCCA CCCCTGAGGA AGCGGAAAAA
GTCATTTGTG TCGATGCAGC CACCGGTAAA AAAATCTGGG AAAACGTTTT CAACGTGTTT
GAATCCGATG TTCCCGATAC ACGCGTGGGC TGGTCGAGTG TTGTGGGTGA CCCTCACACC
GGAAAAGTGT TTGCTCTGGG TGTTTGCGGG CTGCTACAGG CCATCGATGC AGAGACCGGA
AAGACTCTCT GGCAGCGATC GATGAGTGAA GAGTATGGCA TGCTGACCAC TTACGGTGGC
CGTACTAATT TTCCCATTGT GTTCGAGCAC CTCGTCATTA TCGGTGGTGT GCTGATCAAC
TGGGGTGAAA ACGCTCAACC CGCCCATCGT CTGATGGCGT TTGATCAACG CAATGGTGAA
CTTGTCTGGC TGGTTTCGAC CAAGCTTCGA CCGGAAGATA CCACCTACAG CACTCCCACA
TTTGCCGTGA TTGATGGCGA AGTGCAACTG GTGCTGGGGG CTGGTGATGG AAGCATGTAC
GGCTTCCAGC CACGCACTGG CAAGCAGCTC TGGAACTACG ATGTTTCGCC ACGAGGTATT
AACACGTCGC CCATCGTGAT TGGCAGCACT GTGATCTGCG GGCATAGTGA CGAAAATCTT
GATGACACAA AGATGGGTGC CTTGTTTGCC ATCGATGCGA CCAAACGCGG CAATCTGACC
AAAGCTGGAG AACTCTGGCG GAATAAAGAG CAATACATTG GCAAGTGTGC TCCTGTCGTC
GTGGGTGATC GTATCTATGC GATTGACGAT GGCGGGATCT TCTTCGTGGT CGATCTGAAA
ACGGGCAAAC TGATCGGCAA GCAGAAAATT GGCACCATGG CCCGGGCCAG TGCTGTCTAT
GGTGATGGGA AGATTTATGC AGTGGATGCC ACAGGCCGCT GGTTCACTTT TGAACCGGAT
GAAGCCAAGG GGCTGAAGAA AGTTCACTCA ATGCGGCTGG ATGCCGAAGT GAATGCGTCG
CCCATTATTG CCGATGGCCG GTTGTATGTG ACGACCGATA CGACAATGTA CTGTATTGGC
AGTGCCAACC CTGAAGTGAC TTACGACGCT ATTCCGCCCG TTGCTCAGGA AGCACCTGCT
GGTGCCGAAG ATCAACCTGC TGCGGCGACA ATTGTCCCAG CCGAAGCCGT GATGAAGCCC
GGGCAGAAGC TCGCCTTTCA GGTTTTGCTT TACAACAGCA AAGGCCAGTA TCTGCGCCCA
GCGACTGAGA AAGAAATTGC CTACACGATC ACCGGGACTG GCAAGATTGA TCCTGATGGT
GAATTCAGTC TCGCGACTGA TACGGCTAAC ACAGCATCGA TGGTGACAGC CAAAGTTGGT
GAGATCTCGA CCACGGCCCG GATCCGGGTG ATTCCCGATC TTCCACTGGA ATTTGCTTTC
TCCGATGGTG TTGTGCCCAT CACCGGGATT GGGATGCGGT ATCGGCATAT TGGCCTCGAT
TATGACCTGT GGAAAAGGCT CTATGCCGAG AATGTGCTGG CTGCCAAGTG CTACGTGTAC
CTCACAACGC AGTTCAGCAA TCTGGGGCGA GATCAACTCA AGATCGATGA CAGCACACCC
GTTCAGCCAC GGACGACTTT CTTCCGTTAT CTGGGTCTGC TGGAAGAGTT AACGACACAA
GAACTGGCTC AGGCCAAGCT GAATCCCGCT CTGGAATTGC TGCAGAAGGA AGGGGTTCTC
GCCAGCTTCA AGTGGGTTGG GACTCCCGAG ACCGGAGCGA CTCTGGTGGT GGCTAAGGGC
CCGCGGAAGG TCGAAGGGAA TGGCGTGCTG TGCAAGATCA CGACAATTCC TAAGGGGACA
CGCAGCCAGG GGTGGATTGG TCGGCCTGAT ATGGCCAACT ACACGATTCA GGCCGATGTC
GCTTCGGCTC CACTCGAAGT TTCAGCCAAT GCTGACCCGA ATGCCCGTAT GCCGGATATC
GGCATCATGA ACCAGCGTTA TCGGGTCGAA CTGATGGGAG CGAGTCAGCA GGTGAAGGCC
TATTCGTGGT ATCCGCACGA TCAGAAGGTG CATACTGTTC CTTACGCATG GAAACCGGAC
ACCTGGTACA CGATGAAAAT GGTGGTCGAT ACCGTTGAGC ACAATGGTCA GCCCGCATCG
AAAGTCCGTG GAAAGGTCTG GTTGAAAGAT CAGCCTGAGC CTGAAGCGTG GACGATTGAA
TGGATCGATC AGCCCGCCAA TTTCCATGGC AGCCCCGGGC TGTTTGGAAA TGCAAAAGAC
ACGGAGATCT TCTTCGACAA TGTGAAGGTG ACTCCAAGAA GTTAA
|
|---|
| Protein sequence | MYRERLRRLV EYVMHDQLGN QLNESPSEGA TGLIARHTHK LNIAVHRPRF AWLTRSTWAL
LFTVAPVLGM APAISFGQAE TPAASEKEAA PVSESKVNPN RQVAISPLGV IHAGDWPHWR
GPEMNGISRA KNLPATWSPD GENVLWKNDE LAGRSTPIVM NGKLFTLVRH KPATPEEAEK
VICVDAATGK KIWENVFNVF ESDVPDTRVG WSSVVGDPHT GKVFALGVCG LLQAIDAETG
KTLWQRSMSE EYGMLTTYGG RTNFPIVFEH LVIIGGVLIN WGENAQPAHR LMAFDQRNGE
LVWLVSTKLR PEDTTYSTPT FAVIDGEVQL VLGAGDGSMY GFQPRTGKQL WNYDVSPRGI
NTSPIVIGST VICGHSDENL DDTKMGALFA IDATKRGNLT KAGELWRNKE QYIGKCAPVV
VGDRIYAIDD GGIFFVVDLK TGKLIGKQKI GTMARASAVY GDGKIYAVDA TGRWFTFEPD
EAKGLKKVHS MRLDAEVNAS PIIADGRLYV TTDTTMYCIG SANPEVTYDA IPPVAQEAPA
GAEDQPAAAT IVPAEAVMKP GQKLAFQVLL YNSKGQYLRP ATEKEIAYTI TGTGKIDPDG
EFSLATDTAN TASMVTAKVG EISTTARIRV IPDLPLEFAF SDGVVPITGI GMRYRHIGLD
YDLWKRLYAE NVLAAKCYVY LTTQFSNLGR DQLKIDDSTP VQPRTTFFRY LGLLEELTTQ
ELAQAKLNPA LELLQKEGVL ASFKWVGTPE TGATLVVAKG PRKVEGNGVL CKITTIPKGT
RSQGWIGRPD MANYTIQADV ASAPLEVSAN ADPNARMPDI GIMNQRYRVE LMGASQQVKA
YSWYPHDQKV HTVPYAWKPD TWYTMKMVVD TVEHNGQPAS KVRGKVWLKD QPEPEAWTIE
WIDQPANFHG SPGLFGNAKD TEIFFDNVKV TPRS
|
|---|
| |