| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_2846 |
|---|
| Symbol | |
|---|
| ID | 9139558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 3685216 |
|---|
| End bp | 3687090 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Glycosyl hydrolase family 98 putative carbohydrate binding module |
|---|
| Protein accession | YP_003630867 |
|---|
| Protein GI | 296123089 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.646989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAAACG CCACTCTCTT CTCCTCTGGC ATCTCGCCGA ACGCTGACTT CATGACCTCT
ATTCGATGTT TTGCCGGGTG GGTGATCTCG GCCCTGACTT TCTTGGCCGG CCATGGGTTG
GCCACCCCTC TCGTCGCTGC CGACATCGCC GAAATTCCCC AGCAGGCCGC CGCAGCAAGT
GCGATTCTTG AACCATGGCA GAAGGCCAAT ACACAACCGA TCGAGCGATA TCTCCACATT
GTCTGCTTCA CGCCCAAAGA TCGGGAGTTT CCAGCAGACC ATCAGGCCCG CATGACGCGG
ATGCTTCAGC ACATCCAGGC CTTCTATGCA GCCCAGATGG AGCGGAATGG CTTTGGGCCA
AAATCGTTCG GCTTGCAGCT TAACCAGAAT GGTCAGGTCG TCATCCACGA AGTGCGTGGA
GCCAAACCCT TTGCCGATTA CGAAAAGAAA TCAGGGGACG AGATTCGCAA AGAATGTCTG
CCCCTACTTC AAAAAGCCGG GATCAATGCC TCCCAGGAAA CCATTGCCAT CTTTTGTAAT
CTCGCCACGT GGGACGAACA GAAGCTGACT TTCGAGCATA AATCACCTTA TTACGCCGGT
GGCACCTATC GCAGCGGGAC AGCCTGGCAA CTCGACTCTC CCGAACTCGA CACTTTGAAT
CTTACCAAAA AAGAACCCAT GCTTCGCGAC GGCGAATATG GTCGCATTTC CTTAGGCAGG
CACAACTCGA TCTTCATCGG CGGTATGGCA CACGAACTCG GCCATGCCTT CGGATTACCC
CATTGCACTG CCCGGCCTGA TGAAGCCGTC CTCGGCTCTG CCCTGATGGG ATCAGGGAAT
CGCACCTACT TTGAAGAAGT TCGCGGGGAA GGCCGGGGCT CTTTTCTGAC ATTTGCCCAT
GCTCTTCGCC TGGCCTCACA TCCCCTCTTC TGTGGTCGTC AGGAACCCCA GCAATTCAAA
ACGAATCTGA CTTTGAAAAA CCTGCGGATT CGTGCTGAAG ATCATTCGAT TTCTGTCGAA
GGAAACATTC AGGGAGAGCC TCCCGTTTAC GGTGTGGTGG CGTATTTTGA TCCCGAAGGA
AACAGCGACT ACAACGCCAC ATCGGCGACA GCCATTCCCA CACGGGACGG AGCCTTTAAG
TTGAGTTCCA AAGCCTTAAC TCCCGGCCAG TGGGGAACCC TGCGCTTGGT GGCATTGCAT
GCCAATGGAG CCACTTCGAG TCAGCATGCA CAGGGGGAGA TGGAGTACTC GTATTTCGTA
ACAAAGGCTG GTGTTCCCGA GTTAAAGGCC ATTCAAACGC GGCAGGTGCT GGGCCCCTTT
CTAGCCGCCA TCAATAATGG AAACATGAAG CTCGCCAAGC AGGAGAAAGA AAAGCTGAAG
GTTCGTGATG CTCAGACCAT CGCAAACGTC TTGTTCAACA CGACGCCACC CTCTCAAACA
CCCGCGGAAG AAACCGGCAA GCGTAAAGAG TCCAGCCTCA CCAGTTATCG AGCCGACTCT
GCCAAGGTCG GCTGGATGCA ACCCGCCTTC AATCGCTTGC CCAACGCCTC CATCCTGCTC
GAGTGCCGGG GAGAAATCTT TGCGAAAGGA ATCTATGCCC ATGCACCGGC TGAGCATGTC
TACTCTCTCG GCAAAAAATG GAAACAACTC GCAGGGAAAG TGGGATTGGC GACGGGTTCA
GGTGGCTCAG TGATCTTCGA GATTCGGGGG GATGGCAAGA CATTATGGAA ATCCCCAATC
GTCAAAGCTG ATCAGCTCGT TTCCTTTCAG GTGGATGTGA GCGATGTCAA TCAATTGCAA
CTCGTCACCT CACCCTCAGA AGACGGAACC TATCAGGATT GGGGCTTATG GCTGGATCCA
GTTCTTTCCC GGTAA
|
|---|
| Protein sequence | MQNATLFSSG ISPNADFMTS IRCFAGWVIS ALTFLAGHGL ATPLVAADIA EIPQQAAAAS
AILEPWQKAN TQPIERYLHI VCFTPKDREF PADHQARMTR MLQHIQAFYA AQMERNGFGP
KSFGLQLNQN GQVVIHEVRG AKPFADYEKK SGDEIRKECL PLLQKAGINA SQETIAIFCN
LATWDEQKLT FEHKSPYYAG GTYRSGTAWQ LDSPELDTLN LTKKEPMLRD GEYGRISLGR
HNSIFIGGMA HELGHAFGLP HCTARPDEAV LGSALMGSGN RTYFEEVRGE GRGSFLTFAH
ALRLASHPLF CGRQEPQQFK TNLTLKNLRI RAEDHSISVE GNIQGEPPVY GVVAYFDPEG
NSDYNATSAT AIPTRDGAFK LSSKALTPGQ WGTLRLVALH ANGATSSQHA QGEMEYSYFV
TKAGVPELKA IQTRQVLGPF LAAINNGNMK LAKQEKEKLK VRDAQTIANV LFNTTPPSQT
PAEETGKRKE SSLTSYRADS AKVGWMQPAF NRLPNASILL ECRGEIFAKG IYAHAPAEHV
YSLGKKWKQL AGKVGLATGS GGSVIFEIRG DGKTLWKSPI VKADQLVSFQ VDVSDVNQLQ
LVTSPSEDGT YQDWGLWLDP VLSR
|
|---|
| |