Gene Plim_2090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_2090 
Symbol 
ID9138793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp2712301 
End bp2715837 
Gene Length3537 bp 
Protein Length1178 aa 
Translation table11 
GC content53% 
IMG OID 
Productprotein of unknown function DUF1549 
Protein accessionYP_003630116 
Protein GI296122338 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0353884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCAGT CTTCTCTTCG TATCGTCATG ATGGCGATCA CCTTCCATGT GCTAACGAAC 
TGGCAAATGG GTGTGGGCTG GAGTCAGCCA CCGGAGGCCG TCCCTGCCCA GTTGTCGAAG
AGTTCTCAGG AAGCAGCAGC AACTAGTCAG GATGATTCTG GTGAATCTCA ACTCTCGAAA
AACCTGTATG CAGCGATGGT CGCTGCCGAT CAACCCGCAT TCTATTGGAG CTTTGATCAA
GGCTCTCTAA AAGATGTTTC TGGGAAAGAT GCTTCCGGGA TAGACGTTTC TGGCCAATGG
GTCTTCCAGC AGCAAGGAAA CGTCAAGTTA AAAGTCGCAG GGCCCAGGGG TGAGAAGTAT
CCTCTCTTCA GTAGCGACAA TGAGGCTCTG GAGTTCGGCA ACAAAGCGGG CTACCTGACA
CTCGATGATT CCCCCATCAA AACCAAAGAT CCAGCAGCCT TAGCGGCCAG TCCCCTGCGA
TTTCAGCAGG GTGATTCGAT CACTCTGGAA GCCTGGGTTG ACGTGCAGCA GATTGCCGAC
AATCAGCAGA TGTATGTGGT CGGCAAAGGA CGTACCAAAC GCTCCGGCTA TCCTGCCGAA
AATCAGAACT ATGCCTTGCG ATTGGCTGGC AAGAACGGCC AGGCACTCGT CAGTTTTCTC
TTTCGTGATG CGGACAGTCA GCCGGGGAAT AGTGAGAATT ACCATCGCTG GAACTCACAA
TCTGGCGTAG CTGTCGATTC GGGATGGCAT CACATCGCGG TGAGTTACAC TTTTGGCGAG
CCCAAGTCGA TCAAAGGTTA CATTGATGGT AGCCTCGTGG AGGGAACCTG GGATTATGGG
GGGGCGACAA CCAAAGCTCC TGTCGTCGAT GATGATCAGC TCTGGGTGGG CTCCTCGTTA
GGGGGGAATC CCTCCAGTAC CTTTCGTGGG TTGATTGATG AAGTCGCCAT TTATCGATCC
GCCTTGTCAC CTGACCGCAT CGCACAGCAT GCCCGCATCG TTCAGGAGCC CCCATATCTG
ACCCCTCGTG AGCACCTTTC ACGAGACAAC GTCTTTGTCG AGGTCTTTCA TCATGTTCCC
GATAAGCATA ATTGGGAATT TCGCTTAGGT AAGCCGTTCG AATCGTTCCA GCAGGTCGAT
TGGTCACTGA TTGCGATTCC TCAGCTTTAC AACTCTCATG GGGTGCGGGC TGATCGCAGC
AATCCTGTCG TCGTGCGATT AAGCGGATTG GTGGAGTTTC CACCTGAAAC GCGGCATTTG
CTACTCAGGG CACGCAGTGG AGCCAGGCTA TGGATTGATG ACCAACTCGT GCTCGATAAT
CGGCACCCTG GTCGAGGAAG TGATGGTCAT GGCCCGCTCT ATCGAGTCGA GAGCCAGATC
TCAGATGCGA TTCGTCCTTT GCAGCCAGGT GACTATGAGC AGGCCATTGC GTGGAGTCCC
ACATCCGGTG AGCATCGTGT GCAAGTTGAT CTCTGGGTAG GAGGTAAAGG ACGCCGCCCG
GAACTGGGGG AGATGTGTCT GGCTATTAGT GCTGATGGCA AACAGTTCCA GGTGTTGTCT
ACCAGACAAC TCTTTCCACT GGATGACTGG CATTGGGAAC AATGGGCCAA AACCGAGAAG
AAACGTCTTG AAAGTGAAAA TACCGTCAGG CGAAGAAAAG CCTCTGAGGG GTACGCCCGC
TACTGGGAAA AACGTCATCA ACTGGCGAAA GATACGCTCG GGCAGCAGTC ACAAGGGCCC
ATCGGAGAAG ATCTCAGCAG AAACAAAGCC ACTGTCGCGG CTATTAACCG CGAGATTCAA
CAAGGTCTTT CTTCGGCTGG CGTCGAGCCC ATGGCGCCGG TTTCTGATGC CGAGTTTTTG
AGAAAATCCA CACTCGACAT TCTGGGAACG ATTCCTTCAT TAAAGCTCCA GGAGCACTTC
TGGTCTCTGG CGGAATCCAA TCGACGTGCC GAATGGATTG ACTGGTTATT GGAGCAGCCG
GGTTGGGCTG ATCATTGGGT GGCTTACTGG CAGGACGTGC TGGCGGAAAA CCCGAATCTG
GTGAATCCTA CGCTCAATAA CACGGGTCCC TTCCGCTATT GGATTCATGA ATCGTTCAGC
GATAACAAGC CGTTTGATCG ATTCGCGACA GAATTGATCC TTATGGAGGG GAGCACCTAT
TTTGGTGGAC CCGCTGGTTT CGCTCTGGCG ACGCAGAACG ACAGTCCGAT GGCTGCCAAG
GCGCATATTC TGGCGCAGGC CTTTCTGGGC ATGGAGATGA AATGTGCTCG TTGTCACGAT
GCTCCCTATC ATGATTTTCA GCAGCGAGAC CTCTTCAGTC TGGCAGCGAT GCTGAAGCGA
GAACCCGAGT CGGTCCCCAA AACGAGCACA ATTCCAGGTG ATGAAAATGC ACTGAAATCG
CTGCTGGTCA AAGTGACGTT GAAACCGGGT GAGCCTGTCC CACCGGAATG GCCATTTGCA
GAGCGTCTTT CGGCAAGTCT ATCTCCGGAT ATTCTGGAGC ATCCTGCTGA TCGACGTGAG
CAACTGGCTG TGCTGGTGAC ATCTCCTGCC AATCGAAGAT TTGCCGATGT GATCGTCAAT
CGCCTCTGGC AGCGGTATCT GGGAAAAGGG ATTGTGGAAC CGATTGATGA TTGGGAAACC
CCCGACCCGA CGCATCCTCA GGTGCTGTCG ATTCTTGAAC AGGAGTTGAT CGCTTCCGGT
TATGAACTGA AACAGATCGC CCGCGTGATC CTGAATACCG AAGTTTACCA GCGAAAGAGT
GACCATTCGG TCTATAGTGA TGCCCGGCGA GCACGGCTTT TTGCCGGGCC CGCCCCACGA
AAACTGACTG CCGAGCAACT TGTGGATTCG CTCTTTGTGG CTTCCGGGAA GAGTTTCCGC
ACAGAAGAAT TGAATATTGA TGTCGATGGC CTGAGGCCGA TGAATCAGTC CCTGGGATTT
GGTTTCCCGG AACGTGCCTG GGAATTTGTG GCCACAAACA ATGAACGTGA CCGCCCGAGC
CTGGCTTTGC CTGGGGTGCA GAGTTTTATC AATGTGCTCG AAACATTTGG CTGGAGAGCA
TCGCGGCCCG ATCCCCAAAG TCTGCGTAGC CAGGAAACGA CTGTGCTGCA ACCCGCGACC
TTAGCCAATG GAACTTTGAC TCTCCGGGCG TCTCAACTCT CCGATGATAG CTTGATCACA
GAACTGGCGA TTTCGTCGAA GTCCGTCGAG GAGTTTGTTG AGAAAGTCTT CCAGCAGTTG
ATGACTCGTG CTCCATCTGT TCAGGAAAAG GCCATGTTCG TGGAGTTCTT GAGTTCTGGC
TTCAGCGAAC GTGTGCTGGC GGGTACCGAA CCGAAAGTGG TGCTTCGTCC TCAGGCAACG
GGTGTATCCT GGACGAATCA TCTGCAGTCA GAAGCGAACA GCATTAAGGT CAACTACGCC
ATGACGATTG AAAAAGGTGA TGAACCCTCG TCGCGGTTAC AGGCTGATTG GCGTGAGCGG
GCGGAAGATT TTGTGTGGAC GTTGATCAAT ATGCCCGAGT TTGTGCTGCT GAACTGA
 
Protein sequence
MSQSSLRIVM MAITFHVLTN WQMGVGWSQP PEAVPAQLSK SSQEAAATSQ DDSGESQLSK 
NLYAAMVAAD QPAFYWSFDQ GSLKDVSGKD ASGIDVSGQW VFQQQGNVKL KVAGPRGEKY
PLFSSDNEAL EFGNKAGYLT LDDSPIKTKD PAALAASPLR FQQGDSITLE AWVDVQQIAD
NQQMYVVGKG RTKRSGYPAE NQNYALRLAG KNGQALVSFL FRDADSQPGN SENYHRWNSQ
SGVAVDSGWH HIAVSYTFGE PKSIKGYIDG SLVEGTWDYG GATTKAPVVD DDQLWVGSSL
GGNPSSTFRG LIDEVAIYRS ALSPDRIAQH ARIVQEPPYL TPREHLSRDN VFVEVFHHVP
DKHNWEFRLG KPFESFQQVD WSLIAIPQLY NSHGVRADRS NPVVVRLSGL VEFPPETRHL
LLRARSGARL WIDDQLVLDN RHPGRGSDGH GPLYRVESQI SDAIRPLQPG DYEQAIAWSP
TSGEHRVQVD LWVGGKGRRP ELGEMCLAIS ADGKQFQVLS TRQLFPLDDW HWEQWAKTEK
KRLESENTVR RRKASEGYAR YWEKRHQLAK DTLGQQSQGP IGEDLSRNKA TVAAINREIQ
QGLSSAGVEP MAPVSDAEFL RKSTLDILGT IPSLKLQEHF WSLAESNRRA EWIDWLLEQP
GWADHWVAYW QDVLAENPNL VNPTLNNTGP FRYWIHESFS DNKPFDRFAT ELILMEGSTY
FGGPAGFALA TQNDSPMAAK AHILAQAFLG MEMKCARCHD APYHDFQQRD LFSLAAMLKR
EPESVPKTST IPGDENALKS LLVKVTLKPG EPVPPEWPFA ERLSASLSPD ILEHPADRRE
QLAVLVTSPA NRRFADVIVN RLWQRYLGKG IVEPIDDWET PDPTHPQVLS ILEQELIASG
YELKQIARVI LNTEVYQRKS DHSVYSDARR ARLFAGPAPR KLTAEQLVDS LFVASGKSFR
TEELNIDVDG LRPMNQSLGF GFPERAWEFV ATNNERDRPS LALPGVQSFI NVLETFGWRA
SRPDPQSLRS QETTVLQPAT LANGTLTLRA SQLSDDSLIT ELAISSKSVE EFVEKVFQQL
MTRAPSVQEK AMFVEFLSSG FSERVLAGTE PKVVLRPQAT GVSWTNHLQS EANSIKVNYA
MTIEKGDEPS SRLQADWRER AEDFVWTLIN MPEFVLLN