| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1978 |
|---|
| Symbol | |
|---|
| ID | 9138680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2570683 |
|---|
| End bp | 2572152 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003630007 |
|---|
| Protein GI | 296122229 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGGT CTGCAGCACG CCGGGCAGGA CGATCCATTG CATCAGTGCC AGGTGTGCTG
CTGCTGATGG GCGTAATTTT GTCAGGTCTG GGCCATGGGG CTCAGGCCGA AGATTGGCCA
TGGTTTCTGG GTTCGACACA TCTCGGAATC TCCCATGAGA CAGATCTGGC GAAGAAATGG
CCTGCTTCAG GGCCTCCCGT GTTATGGAAA GCCACAATTG GTGAAGGTTA TTCGGCACCT
TCGGTTGTCG GTGATCGAGT AATCATTCAT CACCGGATCA GAAAACAGGA GTTTGTCGAT
TGCCTGAAAG CCACGACTGG GGAAAGGCTC TGGCGATATG AGACGACCAC GTCGTATGTC
GATCCTTACG GATACAATGG CGGCCCGAGA GCCACTCCGC TGATTGCCCA AGGTCTGGTG
ATCACCTTTG GGGCGGAGGG GCGACTGATC TGTCTGGATC TCGAACATGG CCAGTTGAAG
TGGGAAGTGG ATTGTGCCAA AAAATGGCGG GTGCCTGAGC ATTTCTTTGG ATTTGGCTGC
AGCCCGATCA TCGATGGCCA GCGTTTGATT GTCCTGGTCG GCGGACAACC AAATTCGGGT
GTCGTGGCTT TTGATCTCGC CACAGGAAAC GTCCTTTGGG AAGCCGTAGG AAAGTCAACC
TGGGATGGCT GTGTGACTTC AACAGGAAAG CCCTATCGCT GGACTGGAGA AGAAATGGTG
GTCAGTTACT CATCGCCTGT CATTCATGAA GTCGATGGCA AAAGGCATTT ACTCTGTCTG
ATGCGGCAGG GATTAGTCTC GCTCGATCCA GAAACCGGTA AGGAGCGATT TCACTACTGG
TTCCGCGCGC GAGTCCATGA ATCGGTTAAT GCTGCTAGGC CTGTCGTCTG GGGTCGAAAA
ATTCTTTTAG TCGCGGCTTA TGAAGCCGGA TCTGTGCTGT TGGAACTTCA GCCTGGCGGG
GTGGGTGTTA TAGAAGTCTG GAAGAAGCCC GATCAGTTAC AGGCCCACTG GTCAACTCCC
TTTTATGATC AAGGAGTTAT CTATGGGTTT TCTGGCAGGC ATGAAAATGG TGCGATGCTT
CAGGCCGTCG ATGCAGAATC GGGTGAGCTT TTGTGGGAAG AATCTGGCTT GAATATCGAT
GCCGAACTTC TGGAGAGAAG TTCGCAGACA GGTCGATTGA AACGTCGCGA TACGGGTGAA
GAGGTTCCCT GGCCATTTTT TGGGCGAGGC TCAAAAATCC GCATCGGAGA TCGGTATATC
TTATGGAGTG AACGTGGCAC TCTCATGCTG GGGGAATTCT CTCGTCAGGG TTATCGAGAG
GTTAGTCGTA CCGGTTGGGA AGATCTCAGT TATCCCACGT GGGTGGCACC AGTTCTTGCC
AATGGTCAAT TGTATCTGCG GGATGAAGAC ACCCTGCTCT GCCTCGATGT CGCAGAACCC
CGTATAGAGC CAAAAACACC CGGTAAGTGA
|
|---|
| Protein sequence | MTRSAARRAG RSIASVPGVL LLMGVILSGL GHGAQAEDWP WFLGSTHLGI SHETDLAKKW
PASGPPVLWK ATIGEGYSAP SVVGDRVIIH HRIRKQEFVD CLKATTGERL WRYETTTSYV
DPYGYNGGPR ATPLIAQGLV ITFGAEGRLI CLDLEHGQLK WEVDCAKKWR VPEHFFGFGC
SPIIDGQRLI VLVGGQPNSG VVAFDLATGN VLWEAVGKST WDGCVTSTGK PYRWTGEEMV
VSYSSPVIHE VDGKRHLLCL MRQGLVSLDP ETGKERFHYW FRARVHESVN AARPVVWGRK
ILLVAAYEAG SVLLELQPGG VGVIEVWKKP DQLQAHWSTP FYDQGVIYGF SGRHENGAML
QAVDAESGEL LWEESGLNID AELLERSSQT GRLKRRDTGE EVPWPFFGRG SKIRIGDRYI
LWSERGTLML GEFSRQGYRE VSRTGWEDLS YPTWVAPVLA NGQLYLRDED TLLCLDVAEP
RIEPKTPGK
|
|---|
| |