| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1955 |
|---|
| Symbol | |
|---|
| ID | 9138657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2539332 |
|---|
| End bp | 2541155 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | peptidase M3A and M3B thimet/oligopeptidase F |
|---|
| Protein accession | YP_003629984 |
|---|
| Protein GI | 296122206 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGGTT CAGAGACAGT GGTTTACAGT GAAGTCTGGG ATCTGGATTC TCTGCTGCCA
GCTTTAGGAA CGGCTGAATT TCAGCAGAAA CTCGTCAGTG CCAAGAAAGG TCTCGAAGGC
CTTGTGGCAC AACTGACAGC CGCACCAGAG ATCGGTCCCG ATGCTGCCCA GGTGTGGCGC
CAACTGCTGG CGCAGTTTGA AGACATGGAA ACCACCATTT CGGATCTCAG ATCTCACGTC
GAATGCTACT GTGCGAGCGA TGCGACCAAT GCCCAATTTC AAAGAATCGA AGCGGAACTC
TCATCGCTGG CCCCCTTGCG TGAGCAGGTG GGAGCGTTGA TTGAAGCGGC TTTTCGAACG
CTCAGTGAGG AAGATCTGGT GGCTTTTGTG GCCAGGGAGC CCTGGCTTTT TGAGCGGACC
TACGCGTGGA AGTTGCGTCA GCGGGCTGCC CGCATGCGGT TGCCCGAAGC TCAAGAAAAT
CTCGCCAATC AGCTGGCCGT CGATGGGCTC CATGCCTGGG GTCGTCTGTA CGATCGCATT
TCGGGAGCAC TGAAGATTCA GTTGCTCGAA AAGGGTCGGC TGGTCGAAAA ATCATGCAGC
CAGGTTCAGT TCGACAGTCC TGATCGTGCT GAGCGTCAGT CAAATTACTT TGCTGCCGAC
GTGGCGTGGA AATCGATCGA GAATCTCTGC GCCGAGGCGA TCAATCATAT CGCGGGAACA
CGCTTGACGA TCTATGACCA GTTAGGTGTT GAAGACCATC TGGTTTCGCC GCTGATGTGG
AATCGCATGA GCCGGGCCAC GTTGAATCAG ATGTGGAACG TGATTACTCA GAAGAAAGCA
GTACTTCTTA AGTATCTGCA AGCCAAAGCC CGTCTCATGG GTTTGGAAAA GCTCGCCTGG
TACGACTTGA CGGCTCCATT GCCTCGCAAG CCCGGTCAAA TGCCGGAAAA ATTGCCTTAT
CAATCAGCCT GTGAGCAGAT CGTGAGTGCC TTTGGCTCAT TCAGTCCGCA CATGCAGGAT
TTTGCGCGAA TGGCACTCAG GGATGGCTGG TCGGAAGCTG TCAATCGAGC TGGTAAGAGG
CAAGGTGCTT TCTGCACGGG ATATCGGGCG GCGGGGCAAT CCCGCATGTT TATGACATAC
ACGGAGACCG CCGACAGTAT GTCAACTCTG GCCCATGAAC TGGGGCATGC TTATCACTCG
TATGTGCTGA AAGATGTCCC CTATCTGCTC GCTGATTACC CGATGAATCT TGCCGAAACA
GCCAGTACGT TTGCTGAAGC TGTCCTTGCA GATACCCGTA TGCAGCAGGC TCAACATCCG
TACGACAGGT TGTGCCAGCT CGATGCCGCT CTGGCTGATG GTGTGGCATT TCTGATGAAC
ATTCACGCGA GGTTTATCTT TGAAGACAAC TTCCACAAAG CCCGGCGGAA TGGCGAACTT
GCCGCCGATG ATTTGAGCCA GTTAATGGTC GCTGCTCAGA AGGAGGCTTA CCTGGATGCC
CTGGCAGAAG ATGGCTGGAA TCCTCGTTTC TGGGCCTCGA AGCTGCACTT CTATTTCACG
GGGATTCCAT TTTACAACTT CCCCTACACT TTCGGATATC TGCTCTCGCT GGGGCTCTTT
TCGGAAGGGA AAAGCCGGGG ATCAGCGTTC GCTGCGGACT TTGTGAAGTT CCTGGAGTGT
ACGGGAAGCA TGGACGCGGA AGACGCCGTC AAGGTCTCGT TCGGATTCGA TCTTACGCAG
CCCGAGTTCT GGTCACGCAG TATTGATGTC CTGGCGGCAA AAGTCGAAGA GTTCGACAAG
CTCACGGCCG AAATTGTTGG TTAG
|
|---|
| Protein sequence | MSGSETVVYS EVWDLDSLLP ALGTAEFQQK LVSAKKGLEG LVAQLTAAPE IGPDAAQVWR
QLLAQFEDME TTISDLRSHV ECYCASDATN AQFQRIEAEL SSLAPLREQV GALIEAAFRT
LSEEDLVAFV AREPWLFERT YAWKLRQRAA RMRLPEAQEN LANQLAVDGL HAWGRLYDRI
SGALKIQLLE KGRLVEKSCS QVQFDSPDRA ERQSNYFAAD VAWKSIENLC AEAINHIAGT
RLTIYDQLGV EDHLVSPLMW NRMSRATLNQ MWNVITQKKA VLLKYLQAKA RLMGLEKLAW
YDLTAPLPRK PGQMPEKLPY QSACEQIVSA FGSFSPHMQD FARMALRDGW SEAVNRAGKR
QGAFCTGYRA AGQSRMFMTY TETADSMSTL AHELGHAYHS YVLKDVPYLL ADYPMNLAET
ASTFAEAVLA DTRMQQAQHP YDRLCQLDAA LADGVAFLMN IHARFIFEDN FHKARRNGEL
AADDLSQLMV AAQKEAYLDA LAEDGWNPRF WASKLHFYFT GIPFYNFPYT FGYLLSLGLF
SEGKSRGSAF AADFVKFLEC TGSMDAEDAV KVSFGFDLTQ PEFWSRSIDV LAAKVEEFDK
LTAEIVG
|
|---|
| |