| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1953 |
|---|
| Symbol | |
|---|
| ID | 9138655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 2537893 |
|---|
| End bp | 2538696 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_003629982 |
|---|
| Protein GI | 296122204 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCCTT TGTATGATTC GATCTCAGCT CGTCGTCTGA GTGTGACCAA TTACGGAATC
ATTGCAGCCT GTGCTGCCGT GTTTCTCATT CAGTTTTTTG CAGCAGGTCG CGATCAGCAG
ATTATTGAAG ATTTCGGTCT CATGCCCATT CGTGTGACGT CGGGGAATCA GGCTTATATC
GCCCGGATGA CTCCCCTGAC TGCGAATTCC ACTGATGCGA TCGGTTCCAT TCCCAAGCCC
GATCTCGCGC CGATTGTGTT GACGATCGAA CCATCGCCGA TTTCTCCACT GGCAACTCTC
GTGACGAGCC TGTTTCTGCA TGCCGGCTGG CTGCAACTAC TCATCAATCT GTGGTTTCTG
GCGATTTTTG GAGATAACGT CGAAGACCGC TTCGGGCATG TTGGTTATCT CTGCTTCTAC
CTGTTATGCG GTGTTTTTTC GGGCTTGCTG GTCTTATTCA TGGGAAGTGA GTCGGTCAAG
CTTACGATTG GTGCTTCGGG TGCTGTTGCC GGCGTGATTG GCGCTTACAT GGTCATTTTC
CCGAGTGCCC AGATAGTGAC ACTGACGCCG TTTGGCCAAA TGTTTCGCCG CATACAGGTA
CCAGCGATCT ATCTCGTGAT TGTCTGGATC ATTCTGCAAT GGGCTCTCTC TCGAATTGGC
CATTTCCCGC TGATTGAAAT GACATGGTGG ACTCACCTGG GTGGTCTCGT GAGTGGGGTC
ATTCTCGCTG CGATTCTGCG TGCGTTTGGC TGGCTGCAAG CTGGCGAACT CCACGATCCA
ATCGCTGAGC GCGGTTACTA TTGA
|
|---|
| Protein sequence | MIPLYDSISA RRLSVTNYGI IAACAAVFLI QFFAAGRDQQ IIEDFGLMPI RVTSGNQAYI
ARMTPLTANS TDAIGSIPKP DLAPIVLTIE PSPISPLATL VTSLFLHAGW LQLLINLWFL
AIFGDNVEDR FGHVGYLCFY LLCGVFSGLL VLFMGSESVK LTIGASGAVA GVIGAYMVIF
PSAQIVTLTP FGQMFRRIQV PAIYLVIVWI ILQWALSRIG HFPLIEMTWW THLGGLVSGV
ILAAILRAFG WLQAGELHDP IAERGYY
|
|---|
| |