Gene Plim_1840 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_1840 
Symbol 
ID9138541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand+ 
Start bp2407357 
End bp2407923 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content53% 
IMG OID 
ProductShikimate kinase 
Protein accessionYP_003629869 
Protein GI296122091 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0636308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATCT CCCTGATTGG TTATCGAGGC ACTGGCAAAA CAACCATCGG AGCGAAACTC 
GCGGAGGATC TGCACCTGGG GTTTATCGAC GCCGACCAAT TGCTGCAGGA ACGAGCAGGT 
CGCAAGATCA GCGAGATCTT TGCGACCGAT GGCGAGCCCG TTTTTCGACA GCTCGAAGCC 
GACCTAATTC ATGAGCTGGC CAACTCGAAA GAATCCTTCG TACTTTCAAC GGGTGGAGGT 
GTCATCCTGC GGCCTGAGAA TCGAGCAGCG CTGCAATCAG CAGGCCCGGT GGTCTGGTTG 
AAGGCGACAC CACGAACCAT CTGCACAAGG CTGAAACTGG ACTCGGCCAC GGCCCATCAA 
CGTCCCGCGT TACTGGCTGA GACGAAACCA GATCATACCC CAGAAGAACA AATGCTTTAC 
GAAGTGACCA CCCTCCTGGC CAGGCGAGAA CCTTTCTATC AAGAGACAGC ATCGTTTGAT 
GTCACGACCG ATGAACGGGA TGAGACACAA ATCGTGCGAG AAATTCTGGA GAAACTTGTC 
GACTTGAAAA TTCAATCCCA CAGGTGA
 
Protein sequence
MKISLIGYRG TGKTTIGAKL AEDLHLGFID ADQLLQERAG RKISEIFATD GEPVFRQLEA 
DLIHELANSK ESFVLSTGGG VILRPENRAA LQSAGPVVWL KATPRTICTR LKLDSATAHQ 
RPALLAETKP DHTPEEQMLY EVTTLLARRE PFYQETASFD VTTDERDETQ IVREILEKLV 
DLKIQSHR