Gene Plim_1811 details

Gene Information

• Locus tag: Plim_1811
• ID: 9138512
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 2356306
• End bp: 2358369
• Gene Length: 2064 bp
• Protein Length: 687 aa
• Translation table: 11
• GC content: 54%
• Product: PDZ/DHR/GLGF domain protein
• Protein accession: YP_003629840
• Protein GI: 296122062

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.425588
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTGC TGCTTCCATG GCCTCTCCAG GTTTTTCGAG CAAGTATTGC AGCCTTGGGT 
TTAGCCATCG TAACCAGTTT TTCTATGGTA CTGGCCCAGA CTGAGACGGT TGTCGTTGCA 
GAAAATGCTG GTGCAGCCAC GCAAAAAGAG CTGGAACTGG CCGAGGAGAG AGTCTTTCGG 
CTCGCGACTA CACTGATTGC ACCCTCGATT GTACGGATTG AAACCGTCGG TGGATTGGAT 
GAAGTGGATG GCATTCTGGC GGTCAATGGC TCGACCACGG GCGTGATCGT GGGAAGTGAC 
GGCTGGATTG TCACCAGTGC TTTTAATTTC ATTTCGAAAC CCACATCAAT TCTGATCACT 
CTTCCCGATG GCCGGAAGTT TCCCGCCAAG CTGACTGCCA CCGATACGCT GAGGATGCTC 
GCCTTATTGA AAATTGATGC CAGCGAACTC CCCACACCCA TCATTGCCCC ACCAGAATCC 
GTAGAAGTCG GTGCCTGGGC TCTGGCTTTG GGGCGCTCGT TATCGCCGGA TCAACCTAGT 
GTTTCAATTG GAGTAATCAG TGCCAAAGAG CGTGTCTGGG GAAAGGCGAT TCAGACCGAT 
GCCAAAGTCT CTCCAGTGAA CTATGGCGGC CCTCTGATCG ATCTCGAAGG TCGCATGACG 
GGCCTGCTGG TACCTCTCTC ACCTCAATCA CAGACTGTTT CCGCAGGCTT TGAGTGGTAC 
GATTCAGGAA TCGGCTTTGC CATCCCCGCA GCGGATGTGA TGCAGGCCTT ACCCCGGATG 
CAGGCTGGCG AAAATCTGCG GCCAGGATTG ATGGGTATCT CGTTCACCGG AAACGATCTT 
TCTGGTGATG CCCCTGTGGT GGAGAGAGTC CGCTTTCAAT CACCGGCGGC GGCCGCAGGA 
ATTCTGGTCA ATGATGTGAT TGTTGCGGCT GACAACATCC CTATTGCCAG GCTGGGAAAT 
CTCAAGCATG TCCTGGGACG CAAATACGCC GGCGACCAAC TCCAGCTCAA AATCCTGCGT 
AAGAAGGATC CACTGGAAGT GACGATTCCG CTGGTGGCCG AGATTCCTCC ATGGGATGAG 
GCGACGGCTG GCTTTCTGCT CAAACGAAAC TCTTTATCGA CTGATGCTGA ATCCGAAAAA 
GAGAAACTCA TCGTCAGAGC GGTCTTTCCG AATAGCCCGG CCATGTCAGG TGGTCTCCTG 
GCTGGTGACG AGATTCTCGC CATCGATGGG GAGTCTGTCG CAACTGCCGA TTCACTGCGG 
AAACTTCTGG ATCGACGCAA ACCTGGAGAC CAGCCTCGGT TCACCCTCCG CCGCCAGAAT 
CAAAATGGTC AGGCCGAAGA AGTCCAGGTT TCCATCACGT TGGCAGGTCA ACCATTTCCT 
GTCCCTGGAG AACTGCCTGC GATTACGAAC GATAAGCCTC TCGCTGAAGG CGAGAATGCT 
CCCAAAGCCA AAGGCCGTTT TCTTGAGAAG CTGGCCGTCA ATGGCCGCGA GTATTGGGGT 
TATGCTCCCG CGAGTGCTGC TGGCAAACAG CCGCATGGGT TGATTGTCTG GCTGCATCCC 
TCAGGAAACT CAATGGAGGC GGCTGTGCTC AAAAGCTTGA AGGTGGAATG TGACCGCCGC 
CAGATCATGC TGGTGGGCCC CAAAGCTGAG GGGAAGGGCT GGACTCCCGA AGATGTCGAT 
TTCGTCAAAG CACTTGTGGA ACATCTGCGA AGTGAATATC CCGTCGATCC CAGCCGCATT 
GTGGTGATGG GACAGACAGA TTCCACGAAA CTGGCTTCTT TTCTGGTCTT TAAGGATCCC 
TCGATCTATC GTGGAGCCAT TCTTGTGGGT GGGCCCACCG CAGGGCAGCC ACCCGAGCGG 
GATCCTGCTG CTCGGCTGCA CCTGAACCTT ACTATTCCCG AAGGAAGCCG TTCTGCCGAT 
GGTCTCAAAA AGCTGGTCGA ATCTCTCAAG AAGCAAAAAT CAGCTGTTTC AACCATTTTT 
GCCTCTGGCG ACGGAAGTGA ATTCCCGGAT GGAACCTGGG CCGAGCAAAT CGGCATCTGG 
ATTGATCAGA TCGACCGTTT TTAA 

 

Protein sequence

MNLLLPWPLQ VFRASIAALG LAIVTSFSMV LAQTETVVVA ENAGAATQKE LELAEERVFR 
LATTLIAPSI VRIETVGGLD EVDGILAVNG STTGVIVGSD GWIVTSAFNF ISKPTSILIT 
LPDGRKFPAK LTATDTLRML ALLKIDASEL PTPIIAPPES VEVGAWALAL GRSLSPDQPS 
VSIGVISAKE RVWGKAIQTD AKVSPVNYGG PLIDLEGRMT GLLVPLSPQS QTVSAGFEWY 
DSGIGFAIPA ADVMQALPRM QAGENLRPGL MGISFTGNDL SGDAPVVERV RFQSPAAAAG 
ILVNDVIVAA DNIPIARLGN LKHVLGRKYA GDQLQLKILR KKDPLEVTIP LVAEIPPWDE 
ATAGFLLKRN SLSTDAESEK EKLIVRAVFP NSPAMSGGLL AGDEILAIDG ESVATADSLR 
KLLDRRKPGD QPRFTLRRQN QNGQAEEVQV SITLAGQPFP VPGELPAITN DKPLAEGENA 
PKAKGRFLEK LAVNGREYWG YAPASAAGKQ PHGLIVWLHP SGNSMEAAVL KSLKVECDRR 
QIMLVGPKAE GKGWTPEDVD FVKALVEHLR SEYPVDPSRI VVMGQTDSTK LASFLVFKDP 
SIYRGAILVG GPTAGQPPER DPAARLHLNL TIPEGSRSAD GLKKLVESLK KQKSAVSTIF 
ASGDGSEFPD GTWAEQIGIW IDQIDRF