Gene Plim_1720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_1720 
Symbol 
ID9138421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp2233804 
End bp2234472 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content52% 
IMG OID 
ProductHaloacid dehalogenase domain protein hydrolase 
Protein accessionYP_003629749 
Protein GI296121971 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.739414 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCTGC TGTTCGATCT CGATGGTACG CTCACAGATC CATTTGAAGG GATTACAAAC 
TGTATTCGCT ATGCTTTGAA ACAGAACGGT TTTGAAGCAC CTGCTGCGCA AAATTTGAAG
TGGTGCATCG GCCCACCACT TCGATCGAGC TTCCAGCAGT TAACCGGGAG TGACAACCAG
GATCTGCTGG ACAATTGCCT CAAGTCCTAC CGTGAACGAT TCACTGCATC AGGGCTTTAT
GAGAACCGGC TTGTCGATGG GATTGTTGAA GTTCTTGAGG GGCTCGATCG CCAGAAACAC
ACGCTCTGGG TCGCCACTTC AAAACCGGCT GTCTATGCAC GCCGGATTAT CGCCCACTTC
GGTCTGGATC AGTATTTTCT CAATGTCTAC GGGAGCGAAC TCGATGGGAC CCGCACCAAC
AAAGTTGAAC TGCTGAATCA TCTCTTGCAG AAGGAACAGC TTTCGCCAGC CGACACCCTG
ATGATTGGTG ATCGAGAACA TGATGTCTAC GGTGCCAGAA GCAATCAGCT TGCTGCCATT
GGCGTCCTGT GGGGATACGG CTCTCACGAA GAGTTGACTC AGGCCGGCGC TCATGCGCTT
GTCGACACAC CTGGCGAACT CAGTCTGCTG TTAAACAACT GGGCCTTTCA TCAGCCCGTT
ACGCCTTGA
 
Protein sequence
MHLLFDLDGT LTDPFEGITN CIRYALKQNG FEAPAAQNLK WCIGPPLRSS FQQLTGSDNQ 
DLLDNCLKSY RERFTASGLY ENRLVDGIVE VLEGLDRQKH TLWVATSKPA VYARRIIAHF
GLDQYFLNVY GSELDGTRTN KVELLNHLLQ KEQLSPADTL MIGDREHDVY GARSNQLAAI
GVLWGYGSHE ELTQAGAHAL VDTPGELSLL LNNWAFHQPV TP