| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1708 |
|---|
| Symbol | |
|---|
| ID | 9138409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 2217320 |
|---|
| End bp | 2218675 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF1080 |
|---|
| Protein accession | YP_003629737 |
|---|
| Protein GI | 296121959 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.978176 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCTT CGAAAGTGGG AACTCCCATT TCCCACAGTT CTGGACCTCA GATACTGCAC
CCTCGCCCCG TGCATCAACC ATCAACCATC AAAAGAGCAA CCAACGTGAC ACCTAATACG
CACCACATTT CGCGAAGACC TCTCCTCTCT CGACTGACAT GGGCACTTCT CGTTTCCAGT
TTTGCCATTT CACAGATTTC ATTGGTTCAC TTTCTGCACG CTGAAGAGCC CGCGAAAAAG
CCGGCTCCCA TTCTGCTGTT TGATGGTCAA ACTCTTGATG GTTGGAAAAA AGTTGGGGGA
GACGCCACCT ATTCAATCGA GAATGGTGAG ATCGTGGGCC GCGTGGGCCC AGGGCCCAAC
ACCTTTCTGC GAACGCAGGC CACCTATGGC GATTTCGAAC TGAAATATGA TGTCAAACTC
GATACTCCGG GCAATAGCGG AGTTCAGTTT CGCAGCCACC AGAAAGATGG TACGGGCCGG
ACATTCGGCT ACCAATGCGA AATTGATCCC TCACCTCGCC AGTGGACGGG TGGCATTTAT
GACGAATCCC GTCGCGGGTG GATCTATTCT CTCGACAAGG ACGAGCAGGC CCGTAAGGCT
TTCAAGATTG ATGACTGGAA CACGTTTGTC ATTACAGCCA GAGGCCCGCA CATAACCACT
AGTGTGAATG GAGTACGCTG TGCTGATTTG ATCGATACAG CCGATCTGGA AGGGTTTATC
GCACTCCAGG TTCACTCAGG AAAAGCAGGG CAGATTCGCT GGCGGAACAT TCAGTTAACA
CCACTGGGAC AATCTGCCTG GAAGCCACTG TGGAATCAGA AGGATCTGGC TGGCTTTCGT
GCGATTGGCG GTGGCGAATG GAAAGTTGCT GATGGTGAAC TGGTAGGCAC ATCCAGCAAG
GAGGAGTCTC GTCATGGTTT GTTGATCACA GAAGATGCCT TCCGGGATTT TGCAGTGCGT
GTCGAGTTCA AAGCCATCAC TGGAAACAGT GGACTTTACT TCCGCTGTGT CGAGGCAGAT
CCGTACGGTG TCGCAGGCTT TCAGGCCGAG ATCGATCCCA CGAAAGATGT GGGCGGATTG
TACGAAACCA ATGGGAGAGC CTGGATTTTC CAGCCGAGTG CCGAACAGTT AAAGAAAGCC
TTCAAGCCTG GCGAGTGGAA TGAAATGACT GTGGTTGCTC TGGGTGAGCG AATTGTCATT
CACCTCAATG GGATCAAGAC CGTCGATTTT ATCGACAAAG GGGGTAGGGC CGCGGGGAAA
ATCGCTCTGC AACTCCACGG CGGCGATGAT ATGGATGTCC GCTTCCGCAA GGTAGAAATC
ATGCGGTTAG ACGACATTGC CTGCTGCACG GAATAA
|
|---|
| Protein sequence | MFSSKVGTPI SHSSGPQILH PRPVHQPSTI KRATNVTPNT HHISRRPLLS RLTWALLVSS
FAISQISLVH FLHAEEPAKK PAPILLFDGQ TLDGWKKVGG DATYSIENGE IVGRVGPGPN
TFLRTQATYG DFELKYDVKL DTPGNSGVQF RSHQKDGTGR TFGYQCEIDP SPRQWTGGIY
DESRRGWIYS LDKDEQARKA FKIDDWNTFV ITARGPHITT SVNGVRCADL IDTADLEGFI
ALQVHSGKAG QIRWRNIQLT PLGQSAWKPL WNQKDLAGFR AIGGGEWKVA DGELVGTSSK
EESRHGLLIT EDAFRDFAVR VEFKAITGNS GLYFRCVEAD PYGVAGFQAE IDPTKDVGGL
YETNGRAWIF QPSAEQLKKA FKPGEWNEMT VVALGERIVI HLNGIKTVDF IDKGGRAAGK
IALQLHGGDD MDVRFRKVEI MRLDDIACCT E
|
|---|
| |