| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1705 |
|---|
| Symbol | |
|---|
| ID | 9138406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2213838 |
|---|
| End bp | 2215742 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003629734 |
|---|
| Protein GI | 296121956 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGATGGA TGATTTATAG CAGTGCAGGC GTGGCGGTTG GTTTGCTGTT AACGATGGCG
TTCTGGTTCT GCACCTCCTC TTCATTCTGC GACTCGGTTG CCCAGGCCGC CGAGGAGAAC
CTGACATCTG CTGGTCCGTC TCGCCCGGAG ACCAGGACTT CAACCGCTGA TCTCGAAGGT
GGCTATCGCA ATCCCCGCAG TCTGGCCTTG TCGGCGGGTA AGAAGCTGGG ACTTGTCGCC
AATACCGGGG GCTCTGTGGC TCTGGTGGAT TTCTCAAGCG GTGAGAAACT CTCTGAGATC
TCTCTGGCAG GCGTCCCGTG GGATGTTCAG TGGCTGAACG ATCATAAGGC CTATGCGACT
TTGCGAGGGA GAGGCCAACT CGTCGAGATG GGTGTCGTCG GTGGAAAGCT TGAATTCCTT
CGTCAACTCC CCGTCGGGTT GGAACCTTGT GGGCTGGCCA TTGACAGTGA ATCTCGTCCC
CCTTTGGCTT ATGTGGCTGT TTCGGGGAGC GATGATGTCG CTGTTGTTGA TCTGGATTCA
TTCGAGGTGT TGCGGCGTTT GCCAGCCGGG GGTCTGCCAC AGCAAGTTGT TATCTCTCCC
GACCGAAAGT GGCTCGCAGT GGCTGCACAG GTGCCGGCCC GAGTGACAGT CTTCGATCTC
GCCACACTCA AAGTCGCCGG TGAGCACAAA GTTTACACAG ATGGTTTCAA TCTGGGCCCG
ATGGCGTTTG AACCTGAAAC AGGCTCACTC CTCGTCAGTT GTGCCATCAA TCGAGGGTTT
CCGGTCAACT TCAGCAATAT TGAACGGGGT TGGGTGATTG ATAACCGTCT GGTGAGGATG
CCGATTCCAC AAGGAGAACT GGGCGAGCAG GAACAACTTG GTCTCGATGA ATTTCAAAAA
GGTGTGGGCG ATGCTTACGC GACGCGCGTT TCGCCTAACG GTGAATGGAT CGTCATCACT
GCCAGCGGCT CGCATGAGAT CATTCTGGTC AAACGCAAAG AATTGCCTTG GATGCCTGGG
GACCCAGGCG ACTTTGTGCG TCCAGAACTG ATTGGTGACA AGACGAGGTA CCGCCGGATT
TCGCTGGCAG GCCGTCCTTT GGATTTCGAG TTCCTTGATG ATCGTCGGAT TGCGGTCGCC
AATGGTCTCA AAGAAGCCGT GGAAATCGTT GATCTCGAAC ATGGAAAAAT TGAGCAGTCG
ATCGCTGTCG GTACCAATCC CCATGAGAAG TCTTTAGCCC GACAGGGTGA AGAAATCTTC
TATGATGCGA AGCACAGCCT GCATCAGTGG TTCAGTTGTC ATTCCTGCCA CCCCGATGGT
CACACCGCTG GACAACTCTT CGATACTCAG AATGATCGGG GCTATGGAGC AGCGAAGCTG
ACACCCACGT TGTACCACGT GGCTGAAACA GGCCCATGGA CATGGCATGG CTGGCAACGA
GATCTGGAGA ACGCCATGAA GCGTTCTATC GAAGAAACCA TGCAAAGTGA AAAGTCATCG
ACTCAAGAGC AGCAGAAAGC CCTTGTGGCC TACCTTGAAA CACTCCGTCC TGCATCGTGG
CAGGGAAATC CTCTGGAGCG GTCACAACCG CAGGATGATC CCGACTGGCA TGCCGGTAAG
GCGATCTTCT TTGGGAAAGG CGCCTGCGAT AACTGCCACC AGGGGCCGCA AATGGTGCAT
GAGGATACGT TTGAGATCGG GCTGAAAAGT CGAAATGACA GTGACTTCCG ATTCAATCCG
CCGAGTTTGC TGGGGCTGAA TCTCAGACGA CGATTTCTGC ACGATGGACG TTCTCGCAGT
CTGCGCGACG CCCTCGAAAA GTATCATGCC CCGGAAAAGG TGGCTGGCGA GAAGCTTTCT
CCCGAAGAAC TGCAGCAGTT ACTTCGATAT CTCGAATCTC TCTAA
|
|---|
| Protein sequence | MRWMIYSSAG VAVGLLLTMA FWFCTSSSFC DSVAQAAEEN LTSAGPSRPE TRTSTADLEG
GYRNPRSLAL SAGKKLGLVA NTGGSVALVD FSSGEKLSEI SLAGVPWDVQ WLNDHKAYAT
LRGRGQLVEM GVVGGKLEFL RQLPVGLEPC GLAIDSESRP PLAYVAVSGS DDVAVVDLDS
FEVLRRLPAG GLPQQVVISP DRKWLAVAAQ VPARVTVFDL ATLKVAGEHK VYTDGFNLGP
MAFEPETGSL LVSCAINRGF PVNFSNIERG WVIDNRLVRM PIPQGELGEQ EQLGLDEFQK
GVGDAYATRV SPNGEWIVIT ASGSHEIILV KRKELPWMPG DPGDFVRPEL IGDKTRYRRI
SLAGRPLDFE FLDDRRIAVA NGLKEAVEIV DLEHGKIEQS IAVGTNPHEK SLARQGEEIF
YDAKHSLHQW FSCHSCHPDG HTAGQLFDTQ NDRGYGAAKL TPTLYHVAET GPWTWHGWQR
DLENAMKRSI EETMQSEKSS TQEQQKALVA YLETLRPASW QGNPLERSQP QDDPDWHAGK
AIFFGKGACD NCHQGPQMVH EDTFEIGLKS RNDSDFRFNP PSLLGLNLRR RFLHDGRSRS
LRDALEKYHA PEKVAGEKLS PEELQQLLRY LESL
|
|---|
| |