Gene Plim_1579 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_1579 
Symbol 
ID9138279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand- 
Start bp2033269 
End bp2034024 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content54% 
IMG OID 
Productpolysaccharide deacetylase 
Protein accessionYP_003629611 
Protein GI296121833 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.3591 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCATC GCTGGCGGAA TTGGCTGGGT AGAAAACTGC CGGCGATTGG ATCTCGTTTC 
TTCGATTCTA TCCTGTGGGA GTTTCCAGCC CGGTCAAAAG ACGGTGGTCT TTCAAGCGGT 
GATCGACCAG CAGCACTCAC CTTTGATGAC GGGCCACATC CAGAGAGCAC GCCTCAGATA 
CTGAAGCTTC TCGCCAGGAA GAATCTCTTC GCAACGTTTT TTGTTTGCGG TGAACGCGCT 
CAGGCGCACC CTGTATTGAT CCGTGCCATC ATCGATCATG GCCATCATCT TGGCAACCAT 
TCCTATGGTC ATCCCGATGC CTGGAAGCGT TCTTCCAGCC ACATCATTGC AGACCTTGAT 
CGATCGGCAG TCGTCATTGA GCAGATCAGT GGTCAGCCAC TTTTGTGGTA TCGCCCGCCA 
TACGGCCATT TTACGATGGC CACCATTCGC TGGGCCAGAA GATCCCAGCA ACGGATCGTG 
ATGTGGAACC ATCTCCCTCC GGATTACGAC AGCCGCCTGC CTCATGCCGA AATCATTCAA 
CTGGGACGAA GTGCGCTTCC TCAAAATCCA TTGATTTGCC TGCACGATAA TGCAGCGACA 
GCTGCGACGG GACGCTGCGA TGCAGTCCTT GCTCCGCTGA TCGATTATTG GCAGGAGGCA 
GGGCTTCAAT TCTGTCTGTT GCCCCAGGAG GCAGCGTTTC GCCAATCCAT AACTTCATCG 
GAAGTGACAC TTCAATCAGG TGGCCAGACC ACGTGA
 
Protein sequence
MLHRWRNWLG RKLPAIGSRF FDSILWEFPA RSKDGGLSSG DRPAALTFDD GPHPESTPQI 
LKLLARKNLF ATFFVCGERA QAHPVLIRAI IDHGHHLGNH SYGHPDAWKR SSSHIIADLD 
RSAVVIEQIS GQPLLWYRPP YGHFTMATIR WARRSQQRIV MWNHLPPDYD SRLPHAEIIQ 
LGRSALPQNP LICLHDNAAT AATGRCDAVL APLIDYWQEA GLQFCLLPQE AAFRQSITSS 
EVTLQSGGQT T