| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1546 |
|---|
| Symbol | |
|---|
| ID | 9138246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 1993565 |
|---|
| End bp | 1994626 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Porphobilinogen synthase |
|---|
| Protein accession | YP_003629578 |
|---|
| Protein GI | 296121800 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTT CCACACGACC AGATGGTGGA TTTTTCGGGA GCAGCCCGTT CCATGGGCAG
TTTCCTCAAA CGCGCCTGCG CCGCAATCGC CAATCGACGT GGTCTCGGGC ATTAACACAG
GAAAACCATC TGCATGTCAG CAATTTGATC TGGCCGGTCT TCGTGATTGA TGGAGTCAAT
CACGAAGAAG AAGTTGCCAG TATGCCGGGA GTCTTGCGAA GGACGATTGA TCGGCTGCTG
CCGGCCCTGC AAGAAGCAGA GTCACTGGGG ATACCGGCAG TGGCCATCTT TCCTGTGACG
GAACCACGAT TAAAAGATGC TGAAGGAACG GAAGCGATCA ATCCTGAAAA TCTGGTCTGC
CGGACTGTCC GCGCGATCAA AGAGGCGGGG CTTTCACTGG GAGTTATCTG TGATGTCGCC
CTTGATCCTT ATACATCGCA TGGGCATGAC GGGATTCTGC GAGATGGAGT CATCGTTAAC
GATGAGACGG TGGCACGACT CCGCCAGCAA GCGGTCGTTC AGGCTCAGGC GGGTTGCGAC
GTCATTGCTC CGTCGGACAT GATGGACGGC CGCATCGGTG CGATCCGCAA CGCGCTGGAT
GAGGCTCAAT TCCAGCATGT GCAATTGCTC TCTTATGCCG CCAAGTATGC TTCAGCGTTT
TACGGGCCAT TTCGTGATGC TGTCGGATCG GCCTCACAGC TGGGACAGGG TGACAAAAAG
ACGTACCAGA TGAATCCAGC TAACACGGAT GAGGCAATTC GCGAAGTGGC CATGGATCTC
GCGGAAGGGG CTGACATGAT CATGGTCAAG CCCGGCATGC CTTATCTGGA TATTGTTCAT
CGAGTGAAAA CTGCGTTTGG CGTGCCCACT TTTGCTTATC AGGTCAGTGG CGAATACTCG
ATGATCGCTG GTGCCGCTGA AAAGGGTTGG GTGAACCGGG AACTGGTGAT GCTGGAAAGT
CTACTGGCAT TTCGCCGGGC TGGTGCGGAT GGAATTCTTA CCTATTTTGC AGTGGAAGCA
GCTCGATACC TGAACGTAAA TCATCATGGA GTTAAGCAGT AA
|
|---|
| Protein sequence | MSASTRPDGG FFGSSPFHGQ FPQTRLRRNR QSTWSRALTQ ENHLHVSNLI WPVFVIDGVN
HEEEVASMPG VLRRTIDRLL PALQEAESLG IPAVAIFPVT EPRLKDAEGT EAINPENLVC
RTVRAIKEAG LSLGVICDVA LDPYTSHGHD GILRDGVIVN DETVARLRQQ AVVQAQAGCD
VIAPSDMMDG RIGAIRNALD EAQFQHVQLL SYAAKYASAF YGPFRDAVGS ASQLGQGDKK
TYQMNPANTD EAIREVAMDL AEGADMIMVK PGMPYLDIVH RVKTAFGVPT FAYQVSGEYS
MIAGAAEKGW VNRELVMLES LLAFRRAGAD GILTYFAVEA ARYLNVNHHG VKQ
|
|---|
| |