Gene Plim_1527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_1527 
Symbol 
ID9138227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand- 
Start bp1970313 
End bp1970858 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content52% 
IMG OID 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_003629559 
Protein GI296121781 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.125151 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGTGA CACCGGATGA CAAACTTCCC GATGTCCTGA AGATTGAGCC GCGAGTTTTT 
GGTGATTCCC GAGGATTCTT CTTCGAAGTC TTCCAACAGG AACGCTATTC AAGCAGTGGC 
TTATCACAGG CTTTTGTTCA GGATAATGTG TCCCGTTCGT CGCGAGGGAC GCTGCGGGGA 
TTGCATTTTC AACTCGTACG ACCACAGGCC AAACTTATCC AGGTGATTCG TGGTGAGATT 
TTTGACGTCG CCGTCGATGT CCGCAAGAGT TCACCCACAT TCGGCCAATG GACAGGCTAT 
CGACTGAGTG ACGTCAACCA TCACCAACTC TATATCCCTG CCGGTTTCGC CCACGGCTTT 
TGCGTGATTT CTGAAACTGC CGATGTGCTT TACAAGTGCA CCGATTATTA CTTTCCACAG 
CACGAACGCT GTCTCCTGTG GAATGATCCG GCTGTGGGCA TTGCCTGGCC ACTGGAAGAC 
TTTCCCATTC TCTCGGCCAA AGACCAGCAA GGCCAAACCC TCGCCAATCT GGAATCCTTC 
GACTGA
 
Protein sequence
MIVTPDDKLP DVLKIEPRVF GDSRGFFFEV FQQERYSSSG LSQAFVQDNV SRSSRGTLRG 
LHFQLVRPQA KLIQVIRGEI FDVAVDVRKS SPTFGQWTGY RLSDVNHHQL YIPAGFAHGF 
CVISETADVL YKCTDYYFPQ HERCLLWNDP AVGIAWPLED FPILSAKDQQ GQTLANLESF 
D