Gene Plim_1496 details

Gene Information

• Locus tag: Plim_1496
• ID: 9138193
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 1929715
• End bp: 1933281
• Gene Length: 3567 bp
• Protein Length: 1188 aa
• Translation table: 11
• GC content: 54%
• Product: transglutaminase domain protein
• Protein accession: YP_003629528
• Protein GI: 296121750

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGATCC GTGTCGCTCT TCATCACAAA ACTGTCTACA CCTACGATCG ATTGGTATCG 
ATGGCCCCGC ATATTGTGCG GCTCAGACCG GCGCCTCATT GCCGGACACC AATTGTTTCC 
TATTCGCTCA AAATTGAGCC CAAAGACCAT TATCTGAACT GGCAGCAGGA TCCTCACGGC 
AACTTTCTGG CACGTCTGGT TTTCCCCAAA CAGACCACAG AATTCAGTGT GAGCGTCGAC 
CTGATTGCCG ACATGACAGT CATCAATCCG TTTGACTTTT TCCTCGAAGA GTACGCCGAG 
CAATTTCCGT TCATCTACGA ACCATGGCTC AAATCGGAAC TGGCAGCCTA TCTGGCGGTT 
CCCACAGCGA CTCCAGCTCT CAAGGCCTAC ATTGAAACTG TCGATCAAAA GCCACAGAGA 
ACGATTGATT TTCTGGTTGA ACTGAACCGT CAGCTTCATC GAGACATCTG CTACGTCATC 
CGCCTCGAAC ATGGCGTTCA GTCTCCAGAA GAGACCTTAA CTAAACGATC GGGTTCCTGC 
CGGGATTCTG CGTGGCTGCT GGTTCATATT CTGAGGCACC TTGGTTACGC CGCACGTTTC 
GCCTCGGGAT ATCTGCTACA ACTGACTCCT GATGTCAAAG CTCTGGATGG CCCCTCTGGT 
GCCGAATATG ACTTCACCGA TCTGCACGCC TGGACCGAAG TCTATCTTCC GGGAGCAGGC 
TGGGTAGGAC TGGATCCCAC TTCTGGCCTG CTTTGTGGCG AAGGACATAT CCCTCTGGCT 
TGTACGCCCG AGCCAGGTTC TGCGGCACCT ATCACGGGAG CCATTGATCC TTGTGAAACG 
AAGTTCCATT TCGAAATGGA GGTCGTTCGA GTTCACGAAG ATCCCCGAGT CACCAAGCCT 
TACACAGACG AGCAGTGGCA ACGGATCATG CGGCTGGGGA ACGATGTGGA TCGTCACCTG 
AATGCAGCCG ACGTGCGACT GACGATGGGT GGTGAGCCGA CGTTTGTTTC CATCGACGAC 
ATGGAAGGCG ATGAATGGAA TACGGCTGCC ATTGGACCAA CGAAACGAAT GCGGGCTGAC 
GTCCTTTCTC GTCGTATTCG CGAGCGTTTT GCCAATGGAG CACTGATTCA TTATGGCCAG 
GGAAAATGGT ATCCAGGAGA GCCATTACCA CGCTGGGCAT TTACGCTGAT CTCGCGGAAA 
GATGGGTTAC CCGTCTGGCG TGATCGGAAT CTCATGGCTG ACGAAACGAC CAAGTACGAC 
TTTGATTTTG CGGATGCCCG ACGGTTTATC GAACTGCTGG CTAAAAATCT CGAAGTCACG 
ACCAGCACTA TTGTGGATGG ATATGAAGAC GTGGCGTATT ACGCCATGCG TGAAATGCGT 
TTGCCGATCA ATGTCGATGT CTTCGACAAC AAGCTCAAAG ACAAGCAGGA GCGCGAGCGT 
ATCGTGCGAC TGTTTGAGCG AGGTCTGGGC AAGCCCACGG GTTGTGTCTT GCCATTGCGC 
CGTAATCGCT GGAACTCGAC GCCGCATTGG GTCACTGCCG AATGGCCTGT CAGGCGCGAT 
CAGTTCTATC TGCTCCCGGG TGATTCCGCG ATGGGCTTCC GCCTGCCGCT GGATTCGCTG 
CCTTATATTT CCGATGAACG TCTTGGACGA CTGGTCGATC GAGATCCTCT GGAACCATTG 
CCTCCACTTC CTGTCCCTAA AGCACTCCGG CGGGCAGCTC AGGCGATGAT TCCTGCAACT 
CCGATTGGAG TCGCCTCGAC CAGTGGAGCG AATTTGTGGT CGGCTCAAAA CCTGGGTGAA 
GCGGCTCAGG ATCGGCCTTC AACGGAACAC TGGGGGTTTG GTGAAGGTGC GACAGTCTCT 
TCGGTCGCTC GCAAAACTCT GGCTCCTGGC AGTGACGGCG CCAGCAGTCT GCCGGCTGAT 
CGATCTGGCG TATACTCGGG GCCACCTTCG AACGGGCATG ATGGCCACAA TGGTTCAAAT 
GGAAATTCCG ACAGCCATCA AGATTCACAT TGGAAGCAGC CTGAACCATT CCAGATGAAT 
GACAGCTGGG TGCGCACGGC TCTGATCGTT GAGCCACGCG ATGGGCGCAT GTTTGTGTTC 
CTTCCACCCG TTGAAACCGC AGAATGCTTT TTGGATCTCA TCGCTGCAAT CGAGGAAACA 
GCGGCAGAAC TTTCCATGCC GGTCGCAGTA GAAGGGTACC TGCCCCCTTA TGATCCTCGG 
CTTCTCGTCT GGAAGATCAC ACCTGATCCC GGGGTGATTG AAGTCAACAC TCCACCTACG 
GAGACCTGGA ATGACCTGGC CGAATTGACC ACTGGCCTAT ACGACGAAGC GAGGCTGTCT 
CGACTGGGGA CTGAAAAGTT CATGCTCGAT GGACGACACT CGGGAACAGG GGGTGGGAAT 
CATGTGGTAT TGGGCGGTAA GACACCGGCT GATAGTCCAT TCCTCAGACG TCCCGATCTG 
CTGCGCAGCC TGATTACCTA CTGGAACAAT CATCCTTCGC TCTCTTATCT GTTCTCGGGA 
CTGTTTATTG GGCCGACCAG CCAGGCACCC CGCGTGGATG AAGGGCGAAA AGATACGCTT 
TACGAACTGG AACTGGCCTT CGAACAGATT CCCGATCACA CATCCGTCCC TCCCTGGCTG 
GTGGATCGTA TCTTCAGAAA TCTGCTGGTG GATGTGACGG GGAACACGCA TCGCGCTGAG 
TTCTGTATCG ATAAACTGTA TTCGCCAGAC AGTTCCACCG GACGATTGGG ACTGGTGGAA 
TTTCGTGGGT TTGAGATGCC TCCACATGCC CGCATGAGCC TGACGCAACA GTTGCTGATT 
CGGGCCATTG TGGCATGGTT CTGGGAGGAA CCCTATCGTC ATCCGCCAGT TCACTGGGGA 
ACATCGCTGC ATGATCGATT CATGCTGCCA CATTTTCTGG AAGAAGATTT CCAGTGTGTG 
ATTGGCGAGC TGCAAAATGC CGGTTTTGCA TTTGAGAACG ACTGGTTCAA TCCGCATCTC 
GAATTCCGTT GCCAGAAGAT CGGCGAGATC TCTCTGGGAT CGGTGCATAT TGAGTTCCGC 
ACAGCCCTGG AACCGTGGTA TGTGCTGGGC GAAGAAGGTG CCCCCGGCGG AACAGCCCGG 
TATGTCGATT CTTCGGTCGA ACGACTGCAG GTGAAAGTGA AAGGCCTCAC TCCTGGGCGT 
CAAGTACTCA CCGTGAACGG ACGACGCATT CCACTCCATC CGACGGGTAC AGAATCCGAA 
TATGTGGCTG GCATCAGGTA CAGAGCCTGG CAACCACCAT CATGCCTGCA TCCGACCATC 
GGGATTCATT CACCGTTGAC CTTTGATGTC GTCGATACCT GGCTGAATCG CTCAGTCGGT 
GGTGCACAGT ATCACGTGGT GCATCCGGGT GGTCGCGGAT ATGACGTCTT CCCAGTGAAC 
TCCTATGAGG CTGAAAGTCG TCGCATGACT CGCTTCTACA AGATGAACCA TACGGGCGGA 
GCCATGAAGC TTCCTCCGGA ACACACCAAC AGACACTTCC CATTTACGTT AGATCTGAGG 
CGTCCCACAG CACCCATGTT CATGTGA 

 

Protein sequence

MTIRVALHHK TVYTYDRLVS MAPHIVRLRP APHCRTPIVS YSLKIEPKDH YLNWQQDPHG 
NFLARLVFPK QTTEFSVSVD LIADMTVINP FDFFLEEYAE QFPFIYEPWL KSELAAYLAV 
PTATPALKAY IETVDQKPQR TIDFLVELNR QLHRDICYVI RLEHGVQSPE ETLTKRSGSC 
RDSAWLLVHI LRHLGYAARF ASGYLLQLTP DVKALDGPSG AEYDFTDLHA WTEVYLPGAG 
WVGLDPTSGL LCGEGHIPLA CTPEPGSAAP ITGAIDPCET KFHFEMEVVR VHEDPRVTKP 
YTDEQWQRIM RLGNDVDRHL NAADVRLTMG GEPTFVSIDD MEGDEWNTAA IGPTKRMRAD 
VLSRRIRERF ANGALIHYGQ GKWYPGEPLP RWAFTLISRK DGLPVWRDRN LMADETTKYD 
FDFADARRFI ELLAKNLEVT TSTIVDGYED VAYYAMREMR LPINVDVFDN KLKDKQERER 
IVRLFERGLG KPTGCVLPLR RNRWNSTPHW VTAEWPVRRD QFYLLPGDSA MGFRLPLDSL 
PYISDERLGR LVDRDPLEPL PPLPVPKALR RAAQAMIPAT PIGVASTSGA NLWSAQNLGE 
AAQDRPSTEH WGFGEGATVS SVARKTLAPG SDGASSLPAD RSGVYSGPPS NGHDGHNGSN 
GNSDSHQDSH WKQPEPFQMN DSWVRTALIV EPRDGRMFVF LPPVETAECF LDLIAAIEET 
AAELSMPVAV EGYLPPYDPR LLVWKITPDP GVIEVNTPPT ETWNDLAELT TGLYDEARLS 
RLGTEKFMLD GRHSGTGGGN HVVLGGKTPA DSPFLRRPDL LRSLITYWNN HPSLSYLFSG 
LFIGPTSQAP RVDEGRKDTL YELELAFEQI PDHTSVPPWL VDRIFRNLLV DVTGNTHRAE 
FCIDKLYSPD SSTGRLGLVE FRGFEMPPHA RMSLTQQLLI RAIVAWFWEE PYRHPPVHWG 
TSLHDRFMLP HFLEEDFQCV IGELQNAGFA FENDWFNPHL EFRCQKIGEI SLGSVHIEFR 
TALEPWYVLG EEGAPGGTAR YVDSSVERLQ VKVKGLTPGR QVLTVNGRRI PLHPTGTESE 
YVAGIRYRAW QPPSCLHPTI GIHSPLTFDV VDTWLNRSVG GAQYHVVHPG GRGYDVFPVN 
SYEAESRRMT RFYKMNHTGG AMKLPPEHTN RHFPFTLDLR RPTAPMFM