Gene Plim_1457 details

Gene Information

• Locus tag: Plim_1457
• ID: 9138153
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 1880276
• End bp: 1880977
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 54%
• Product: RNA polymerase sigma factor, sigma-70 family
• Protein accession: YP_003629490
• Protein GI: 296121712

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAATCG AGAATTCACT GGATCAATCC TTCGTCTCCA CAGCCTCCGA TAAAATGCGG 
CAGTCTCTTC ATTCTCCGTC GGGGAATGTT CATGCGTCTG ATCCAGCTCC ACCAGAAGGA 
AAAGCTGCTG TTCGACCATT CGAACAGGAG CTGATTCAGG CGCTAAAGCT GATTGGTGAG 
GGGCAATGGC AAGTCTGGTC GCGAGTGGTG GGGCTTGTGG GGCCAAGATC TCTGCGATAT 
GCCCGTTTTC TGACGGAACA CGACGCTGAT GCCGAAGATG TTGTTCAGCA GTCTCTGACC 
CGATTGGCAG CTTCGCCCGC TCTGTTTCGC GTTGTGCAGC ATCCCTGGGC CTACTTTCTA 
AAGATTGTGC GAAACGAGGC CATTCGTTTC CGCATTAAGC ACCAGCGGCC TCCCGCCATC 
TCGGTCAATT TACTCACGGA GTTGCAGTTT CGCTCTTCGA TAGCGATTGA TCCGCTGGAA 
GTCGCCGAGC GTCAACAGAT GATCCAGGCG GCATTGACCG AACTGCCGGT GGATCAAGCG 
GAGGTTGTCA TTCTCAAATT CTGGGAAGGC ATGACATTTC AGGAGATTGC CTCAGTGATG 
GGGGAAAGCC CCAATACAGT GGCCAGTCGC TATCGCTATG CGATTGCCAA GTTGGCCCGG 
CTGCTTCGTG CTCTGGAAGG AGAAGCCGCC CATGTCTCAT GA 

 

Protein sequence

MTIENSLDQS FVSTASDKMR QSLHSPSGNV HASDPAPPEG KAAVRPFEQE LIQALKLIGE 
GQWQVWSRVV GLVGPRSLRY ARFLTEHDAD AEDVVQQSLT RLAASPALFR VVQHPWAYFL 
KIVRNEAIRF RIKHQRPPAI SVNLLTELQF RSSIAIDPLE VAERQQMIQA ALTELPVDQA 
EVVILKFWEG MTFQEIASVM GESPNTVASR YRYAIAKLAR LLRALEGEAA HVS