| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1444 |
|---|
| Symbol | |
|---|
| ID | 9138139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 1856139 |
|---|
| End bp | 1859132 |
|---|
| Gene Length | 2994 bp |
|---|
| Protein Length | 997 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003629477 |
|---|
| Protein GI | 296121699 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.513817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGATT ACACCTATGC CGATGCCTCG TCACCCGGTT CTGATCCCAC GGGCGATCAC
GGCTACTCCG AATACGAAGG CGTCTTTGAA AGTGGCACCG CTCACGATCT GGCGGAATGG
AATGTCACCT TCTCGAATCC CATGAGCCTG ATCAATCAGG CACTGGCCCC GTACAACTAT
TTCAACCTGC CGTTCATCCC TCAGGCCTTC ACCAATGCCA TGGGTGGCTA TGAACCGTCG
TATCTGGGTG ATTGGCACTT GTCGAGTGAA GGCTGGGCCA GTGATACGCA GTATTACAAA
TACTACGAGA ACGACCGGAC TGGGGATTGG TTTATTCAGT ATTGGGATCA CGAGCCAGAC
CACGATGATC CACCACTTTA CACTGAGTAT GGAGGGCCAA GCCATGATGC GCTGTCTCAG
GCTATGGGCC AAGCCCAAGC GGCTGCGCAG AAAAAGGCGA ATCAAACACC TCCAGACGAA
GCTCCTCCAG CTCAAAGTGC TGATCAGAAC CGACTTGAAG AAGAAGGTTC CGGATCGGGT
GGAGAATATA GTTCGAGTGA GCAGTCTGAA CCTCCGTCGC CGGGGGATGA GACGGGGCAG
GCTCAAAATA ACGCCGAAAA CCGAGCCCAA GAGCGCCTTG AGTCGGCTGC ATCAGGAAAT
AGTACCGAGG TCTCACCATC GAGTCAGGGT GGTGTCAGCA TCCCCTCAAC TCCAGATACA
CCTGTATCAG GAGTGTCACA GCCAACGGCA CCTATTGCCC CTTCTGGTAA CGCCGGAGCG
CCTGCACAGT CGGCTTGGGA TCAATTTGTA GGAGTTGCTA GTCAGGTAGC AAATGCACAC
GCTCAATTGT CCGCAGGTGT TGTTCAGGCG TTCGTGGTCG ATGGATTCAT GGGTAGTGTT
CAGGGAATCT ATGATCTCGC TAAAGGGGCC TACAATGCTG CGACACAGTA TGCAAGCTGG
CAAATGAATC GGCTTTGGTC AAGTCCGTGG AAGGTTCTCG TCGATCCTTG GGGAGTCGGT
GAAGGAATAG GAATTGCCGC AAAGAAAGTG TCAGAACTGA CTGCAAAGAT GCAGCCTTAT
GTTGATGAAA TCTCATCACT ACCCTCTGAA ACTATTTGGA AGTTGTTTAT TGGAGACTTT
GATGCTGTTC GAGGTCAAGT TTCCCCCACA CTCCTTCGAG CCGCTGAACT TGCTCACGGT
TTATCTAGCA GTGTCTATGA ATCCATTGCG AGCAATCTGA CGATGGACAA GGCCCCTGGC
CTGCTTGGTC GAGTTTTTGG CATGGTCTTG TATGAGATCG TTGAAGGTCT CGTCATAACG
GGGATCACTG CAGGAGCAGG AGCGGCTGCA GTAGGGGCAA AGATTGCTAA GAAACTGACA
CGTTTGTCAG ATCTTCCAGG GCTCGATTCG CCAAAGGTTC AAAAAGCAAT CAATGACGTG
GTCGGTTTTC TGCAGTCCGG TGGAAAAGTC GATGGGCCCT CAAAGCCACC AGCGACACCC
CACATGCCTA AATCCTCAGC TGAACTCGCA GACGAAGCGG CTGCACTCGC AAAGAAAAAA
TGTGATGAAG CACGTGCTCT TGGAAAGGAG GGCGGCTGCT TTGTACCGGG CACATTAGTC
TCTGTGACAA GCGTTGCTCT TCATGACAAA TCCATTTCAG ACTTTCTACT CGTAACGACA
AACGGAATTT GCCCCTCTTC AGAACCTGGG GTAAGTGAGC AATCATTCTC ACGTTCAGTC
GATGCTAAAG AATATGCATC ACTACCAATT GAAACGATTT CTTTAGGCTC ACGAGTAGTG
GCGAGTAATC CCCATCCATG GGAGTTTGAT TCTCGCTGGG AAGAGCCTGA ATCTGACAGT
TGGCGCACAA TACATCTGGA AATGTACAAA CAGGATGGCT CGGTTATTGA CTCACAGTTA
CTGCGTCCGG TGGAGGTTGT TGAGTCGTTA AATCTGCATC CTGGACGCAT GATTCTCATT
CATGCAGACG AACTGGATGT CGCAGGAATG GCCCTCATTA AATCTGTGAG CAATGCTCCA
TCCATTGCCC AGGGAACTGG CCGAGTGGTA ATTGGTCGCT TTATGACCCG TGAGGTCAAC
GAACTCATTC GGCTCACACT CTCCACTGGA GATGTCGTGG AGGGAACACC TAACCACCCA
CTTTGGTCAG TCGATTTGAA TGACTGGCAA GCAATGGAGA TGTTCGAAGC AGGAGATTAT
CTCGCTGGCC ATGAAGAAAA TGTGCTGGTT CTTTCAAAAG AACGTGTCGA GCACACCACT
CCAGTCTACA ACCTCGAAGT TCACGGCGAA CACGTCTACC ATTTGACACA AGCGGGAATT
CTGGCTCACA ATACATATCC AGAAGACACA CCAAATCCAC CTCCAACCAA AGACATAGTA
CCGGAACCAC CAAGCCCACC CAAAGCCGAC GATATAGTGC CGGAGGTGAA GGGTGTCGAA
CCGACGACAC GATATACACT CAAAGACAGA TTGAATTCGC CGGATGATGG CGCTCATAAA
GAAGTCTTTA GTGTTATGGA AACAGATAAA ATTGCAGTTG GAATACTCAA AAAGGGAGCG
TCTCCAGCAA TACTTGCTAA AGAAAGAGCT CTACTTAAGC AACTTGAAGA AGCGGGGCTT
CCTGTTATGA AAAATCACGA AATCACAGAA TACAATGGGA GGCCGGCAAT TGTCATGGAT
CGTTATGCGC TTGGTTCAAA GAAAATCGTA AAGTACAACT CTAAGATTCG GGATCTTGAG
TCTATTGGAG GAAGTGTTCT TCTAAATGAA AAAAGCATCT CTGATCTAAT GGCGATAAAG
TCAAAGATGA TGGAAAAGAA CATCAAGATC GATGAGCTCC AGTTTCTGAT TGGAGAAGAT
GGATCGGTTG TCATCGCCGA CCCTCTCGAT GTGTATCCTC AGCCGCCTAC CAGTCGCAAT
AAGAAAATGA TTGACATGCT GATTAGAAAG GCGATTGAGA ATACTAGGAT TTAA
|
|---|
| Protein sequence | MVDYTYADAS SPGSDPTGDH GYSEYEGVFE SGTAHDLAEW NVTFSNPMSL INQALAPYNY
FNLPFIPQAF TNAMGGYEPS YLGDWHLSSE GWASDTQYYK YYENDRTGDW FIQYWDHEPD
HDDPPLYTEY GGPSHDALSQ AMGQAQAAAQ KKANQTPPDE APPAQSADQN RLEEEGSGSG
GEYSSSEQSE PPSPGDETGQ AQNNAENRAQ ERLESAASGN STEVSPSSQG GVSIPSTPDT
PVSGVSQPTA PIAPSGNAGA PAQSAWDQFV GVASQVANAH AQLSAGVVQA FVVDGFMGSV
QGIYDLAKGA YNAATQYASW QMNRLWSSPW KVLVDPWGVG EGIGIAAKKV SELTAKMQPY
VDEISSLPSE TIWKLFIGDF DAVRGQVSPT LLRAAELAHG LSSSVYESIA SNLTMDKAPG
LLGRVFGMVL YEIVEGLVIT GITAGAGAAA VGAKIAKKLT RLSDLPGLDS PKVQKAINDV
VGFLQSGGKV DGPSKPPATP HMPKSSAELA DEAAALAKKK CDEARALGKE GGCFVPGTLV
SVTSVALHDK SISDFLLVTT NGICPSSEPG VSEQSFSRSV DAKEYASLPI ETISLGSRVV
ASNPHPWEFD SRWEEPESDS WRTIHLEMYK QDGSVIDSQL LRPVEVVESL NLHPGRMILI
HADELDVAGM ALIKSVSNAP SIAQGTGRVV IGRFMTREVN ELIRLTLSTG DVVEGTPNHP
LWSVDLNDWQ AMEMFEAGDY LAGHEENVLV LSKERVEHTT PVYNLEVHGE HVYHLTQAGI
LAHNTYPEDT PNPPPTKDIV PEPPSPPKAD DIVPEVKGVE PTTRYTLKDR LNSPDDGAHK
EVFSVMETDK IAVGILKKGA SPAILAKERA LLKQLEEAGL PVMKNHEITE YNGRPAIVMD
RYALGSKKIV KYNSKIRDLE SIGGSVLLNE KSISDLMAIK SKMMEKNIKI DELQFLIGED
GSVVIADPLD VYPQPPTSRN KKMIDMLIRK AIENTRI
|
|---|
| |