Gene Plim_1402 details

Gene Information

• Locus tag: Plim_1402
• ID: 9138097
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 1783249
• End bp: 1785198
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 54%
• Product: signal peptide peptidase SppA, 36K type
• Protein accession: YP_003629435
• Protein GI: 296121657

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0628867
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGAGTC ATTCGTTTTT CTGTCGAGTT CTGGGCGTCG CCATGTGGCT GGCTGCAAGT 
GGTCTGTACC AGCTGTCTCA AAGCGTTGCG AGTGAGCCTG TCCCGGTAAA AACAGCCCTG 
GTAAAGCCAA CGCAGGAAAA GCCAGCGGAA GATGCACCAG CGACTTCGGC CACAACGACA 
ATCACTCCTG GCTCAGAAAA AGCAGGTACG GGAACCGCAG GTAACAAAGT TCCGGAAGCT 
GAAGTCAAGC CTCTCAAGAT TGCTCATTTG AAGATCTCCG GTGCCTTAAC TGAGGGAGCA 
CCACTCGAAG GGCTATTTGG AGAAACTTCC GAAACCTTAT TCACTCTCAT TGCTCGCCTC 
GACAAAGCGG CAGCCGACAA AGAAATCCAA ACGGTTGTCC TCGAGTTTGG TGACCTTGCT 
CTCGGTCGTG GCAAGATTTA TGAACTTCGT TCGGCCATTG CCCGCATTCG CGCTGCCGGG 
AAAGACGTCT GGGCTTATCT CGATTCCGCC GACACCACTG CGTATCTGCT CGCTTCGGCC 
TGTGACAAAA TCGTGATGCC CGAACCCGCC ATGCTCATGA TCCCCGGCGT GCGGGCTGAA 
GTCTGGTTCT ACAAAGAGAT GCTCTCCAAG ATCGATGTCG AGCCCGAAGT TGTGCGTATT 
GGCGAGTTCA AATCGGCCGG TGAACCTTAC ACCCGCAAAG ATATGAGCCC CGAGTTCAAA 
AAAGAGATGG ATGAACTCCT CGACGATGTC TACTCCCAGA TTGTGTCAAC CATTGCGGAA 
AGTCGAAAAA TTCCCGCAGA CAAAGTTCGC GAGTTGATCG ATACCGCCGT CTTCACCAGC 
GAAAAAGCCA AATCCGCTGG CCTTCTGGAT GAAGTGCAGT ATGAGTCTGG TCTCTATGAC 
GTAATCAAAA AGTCTCACAA CGTCACTTCC GCAAAACTGA CTCGCAACTA TGGTCGTAAG 
AAGACAGACG CTGACCTTTC TGGCCTGAAT GGCATTATCA CTCTTATGAA TGCACTCTCC 
GGGCAGACAC CCGCTTCTCG GAAGTCATCG GCTCCCAAGG TTGGCATTCT CTATGCCAGT 
GGCATGATCT CCACCGGGAG CAGCCAGAAC AGTCCCCTTT CGGGCGAAGT GCTGGGTTCC 
GAGACCTTTA TCAAGGCCGT TCGTCAACTG AGAGATGACG ACACTGTCAA GGCGGTCGTG 
TTACGGATCG ACAGCCCTGG TGGAAGTGCG CTAGCCAGTG ATCTGATGTG GCACGAACTG 
GAACTTCTCA AAGCGAAAAA ACCACTCGTC GCCAGCATGA GCGATGTCGC CGGCAGCGGC 
GGCTATTACA TCGCGATGGG AACTCAAAAG ATTTACGCTG CCCCCGGAAC AGTGACAGGT 
TCGATTGGTG TTGTCGGCGG GAAAGTAGCA CTCGAAAAAC TCTACAACAA ACTGGGGATC 
AATGTCGTCG TTCTCGAACG CGGCAAAAAC AGCGGCGTAC TCTCGACCAC TACAGGCTTT 
ACGGAGTCTC AGCGAGAAGC GACTCGACTG CTGATGAATG AAATTTACGA GCAGTTCACC 
AGCAAGGCGG CTGCTGGACG AAAAATGGAA GTCGCACAAC TGGAAAAGCT GGCCCGCGGC 
CGGATTTACT CGGGCAATCG TGCTCTCGAA ATCGGCCTCG TGGATGAGAT CGGCACTCTG 
GAAGATGCGA TCAAGGGAGC TATCGCCCTC GCCAAGATCG AAAACCCAGC CAAGCTCGAA 
CGCCTGGAAC TCCCCAAACC AGGCAGTCCA CTGGAATCGT TGCTGGGCCC CATGGGTGCC 
GAATCTCGCA TGGAAGCCCG TCTGGAACAA CGTCTTAAAG ATCTGATTCC CACGGCACTT 
CAACCCGCTC TGCAGGATGA ACTGCTGATG CGCATGCTGG CGAATCAGCC CGTGCTGACA 
GTCATGCCCT ACCGTCTCGA ACTGAAGTAG 

 

Protein sequence

MLSHSFFCRV LGVAMWLAAS GLYQLSQSVA SEPVPVKTAL VKPTQEKPAE DAPATSATTT 
ITPGSEKAGT GTAGNKVPEA EVKPLKIAHL KISGALTEGA PLEGLFGETS ETLFTLIARL 
DKAAADKEIQ TVVLEFGDLA LGRGKIYELR SAIARIRAAG KDVWAYLDSA DTTAYLLASA 
CDKIVMPEPA MLMIPGVRAE VWFYKEMLSK IDVEPEVVRI GEFKSAGEPY TRKDMSPEFK 
KEMDELLDDV YSQIVSTIAE SRKIPADKVR ELIDTAVFTS EKAKSAGLLD EVQYESGLYD 
VIKKSHNVTS AKLTRNYGRK KTDADLSGLN GIITLMNALS GQTPASRKSS APKVGILYAS 
GMISTGSSQN SPLSGEVLGS ETFIKAVRQL RDDDTVKAVV LRIDSPGGSA LASDLMWHEL 
ELLKAKKPLV ASMSDVAGSG GYYIAMGTQK IYAAPGTVTG SIGVVGGKVA LEKLYNKLGI 
NVVVLERGKN SGVLSTTTGF TESQREATRL LMNEIYEQFT SKAAAGRKME VAQLEKLARG 
RIYSGNRALE IGLVDEIGTL EDAIKGAIAL AKIENPAKLE RLELPKPGSP LESLLGPMGA 
ESRMEARLEQ RLKDLIPTAL QPALQDELLM RMLANQPVLT VMPYRLELK