| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0716 |
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| Symbol | |
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| ID | 9137399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | + |
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| Start bp | 935879 |
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| End bp | 937510 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_003628762 |
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| Protein GI | 296120984 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAACAG TGACACCAAC TGTGCTGGTG ATTGATGATG ACCGTACGAT TCTGTTGCAG
ATTTCTCGCG CGCTGGAACC GTTAAACGTT CAAGTCGAGG GGGTCACGAC GGCACAGGCT
GGCCTCGAAG CCATTCGCAC ATTGAAACCC TCTGTCGTGC TTTTGGATCT GGTGCTCCCG
CAAATTTCGG GAATGGAACT TTTCCAACGC ATCAAAGATC TCGACCGGCG GTTACCGGTC
ATCTTCATCA CGGCCGATGC CGCCAGCGAA TCGGCGATTG GTGCCATCAG CATGGGGGCC
TACGACTATG TGGCCAAACC TTTGCATCTG GCCCAGTTAC AGCAACTTGT TTCCAAAGCG
TTGGAAACGC GGAGGCTGAT GAGTGTCCCG GTAGCGGTCT CGGTGACTGA TGATGATAAA
GCCGGCGACC AGGGCGATTT TTTTGTCGGT CGCAGCCCGC GGATGCTCGA AGTCTTCAAA
GAGATTGGCC GTGTCGCTCA ACAGAATGTC ACAGTCCTTG TGCGCGGAGA AAGTGGTACC
GGAAAAGAAC TCGTCGCCCG GGCGATCTAT CAGTTCGGCA GCCGCTCGAC GCGTCCGTTT
ATGGCAGTCA ACTGCGCTGC CTTGCCAGAT ACATTGCTGG AATCTGAACT GTTCGGGCAC
GAGAAAGGGG CCTTCACCAG TGCGGATCGC CGCCGCATTG GCAAGTTCGA ACAGTGTAAT
GGCGGTACGT TGTTCCTCGA CGAAGTGGGC GATATGTCCC CCTTAACGCA GGGCAAAGTA
CTCCGCTTGC TGCAAGAGCA GCGGTTTGAA CGAGTGGGCA GCAACGACAC CATTGAAACG
AATGTCCGTC TGGTCGCCGC CACCAATCGT CCCCTCGAGC AGATGGTACA GGATGGCCGC
TTTCGTGCGG ATCTGTTCTA CCGCCTGAAT GTCGTTACGA TCTCTTTGCC GCCACTCAGG
GAGCGTGTCG AGGATATTCC ACTGCTCCTC AAATACTCCT TTTCGCGTGC CAGGCGTGAG
TTGGATAAGC CAGATGTCGA AGGACTCTCA CCTGATGCGC TGGCATTGCT GATGGCCTAC
CCTTGGCCGG GAAACATCCG AGAACTGCAA AGTGTTGTGC GGCAATGTCT TCTCAAATGT
ACGGGGCCCG TGATCGTTCC GGATTTTCTG CCAGTAGCGA TTCTCGATTA CAAAGCTGCT
CCCCATGGTG AAGCTACGAA CCGAGTTTTC TTTCCAGAGA ACACCCCTGC ATCGATCAAC
AATGATCCTT CTTCCACTGC CGGAGTGCGA CCTCTTTCGC AACTTCCGGA GGACTCGTCT
ATCGCGGGTG TTGCTCCAAT ACCTCATGGG ATTCCGCAGA CGCATACCCA GGCTTCTGGA
ATGAGCGAAC TGCCAAGCTC GGACATCGGC CAGTTGATTG AAGCCAGGCT CCAGGCCGGT
TCGACCAATC TTTATGCCGA AGCTCTGGAA ATGATGGAGA AGTATCTCCT CACCCGCGTC
CTGCAGGCCA GCCAGGCCAA TCAATCCAAA GCGGCCGAAA TCCTGGGGAT CACACGCGGT
AAAGTGCGTG ATCGGATTGC CGCCTTCGGG ATCAATCTCG ACAAGAATGT CTCCATCGAT
CCTCCACGTT GA
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| Protein sequence | MKTVTPTVLV IDDDRTILLQ ISRALEPLNV QVEGVTTAQA GLEAIRTLKP SVVLLDLVLP
QISGMELFQR IKDLDRRLPV IFITADAASE SAIGAISMGA YDYVAKPLHL AQLQQLVSKA
LETRRLMSVP VAVSVTDDDK AGDQGDFFVG RSPRMLEVFK EIGRVAQQNV TVLVRGESGT
GKELVARAIY QFGSRSTRPF MAVNCAALPD TLLESELFGH EKGAFTSADR RRIGKFEQCN
GGTLFLDEVG DMSPLTQGKV LRLLQEQRFE RVGSNDTIET NVRLVAATNR PLEQMVQDGR
FRADLFYRLN VVTISLPPLR ERVEDIPLLL KYSFSRARRE LDKPDVEGLS PDALALLMAY
PWPGNIRELQ SVVRQCLLKC TGPVIVPDFL PVAILDYKAA PHGEATNRVF FPENTPASIN
NDPSSTAGVR PLSQLPEDSS IAGVAPIPHG IPQTHTQASG MSELPSSDIG QLIEARLQAG
STNLYAEALE MMEKYLLTRV LQASQANQSK AAEILGITRG KVRDRIAAFG INLDKNVSID
PPR
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