| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0672 |
|---|
| Symbol | |
|---|
| ID | 9137353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 874793 |
|---|
| End bp | 876064 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | Ribonuclease D |
|---|
| Protein accession | YP_003628718 |
|---|
| Protein GI | 296120940 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAT CGTTGATGAC TCAGCAGCAT GAGTTTGAAG CATTCTGCAA ATCCATCCGT
CAAGCGGGGA TTGTGGGGTT CGATACGGAG TTTATTTCGG AGTTTACCTG GCGCCCCGAA
TTGTGCCTTC TGCAGCTGGC GACGCCTGAT CGAGCAGTTC TGGTCGATCC GTTTGAAGTG
CGTGATCTTG CTCCCTGGTG GGAGATTATG CTGGATCCCG ACGTCGTGGT GGTGGCGCAC
GGTGGTCGAG AAGAGGCGCG GTTCTGTGTC ACCAACACGG GACAGGCTCC GGTCAACTTT
AAAGATGTGC AGATTGCGGA AGGATTTCGA GGTCGGAGTT TTCCTTTGGG TTACGACGCG
CTGGTGAAGC GTGTTCTAGG TCATAAATCC CACGGGAAAG AAACACGTTC CGACTGGCGC
CGAAGACCAT TGACGAAATC GCAGGTGCAT TATGCGCTCG AAGATGTTCA GCACATCCTG
CCCATCTGGG CCAAGCAATC GGCCGATTTG AAGAAGAAAA ATCGACTGGC CTGGGTTGAA
GATGAATTCA CGCGGCTGGT TCGCGATGTG GTACTGGAAC GAGCTGATGA GGCGTGGTTA
AAGCTACCCG GGCTGCACAA GTTGAATTCC CGCGAACTGG CTGTCGCCAA GAATGTTTTC
TGGTGGCGGG AGCATGAAGC CGAGGCGCGA GATAAGCCTG CACGACGCAT CTTGCGGGAT
GACCTGTTGA TTGAGCTGGC TCGACGTCAG CCAGCTAATA TTGATGAACT GGTCGCGACC
CGGGATATGA ATCGCACGGA GTATCGCAAG GCGGCTGCAG AGATTCTCGC AGCGATTGAT
ACCGCCCTGG CGCTCCCTGA AGATCAGTTG CCTTCGAGGC CCCCGGAGCC GGAGGACGAT
CAGTCGCATG ATGAGCAATT GCTGGGTCAG CTCCTTGGGA TTGCGCTGGC CAACCGCTGT
GCTGAAATGA ACGTGGCGAT GTCGATTGTG GGGAAGACGG CTGACCTGAG GCATCTGGTG
AGGTGGCATG TCTTTGGGGA CAAGCGGCAT GGAACACCCC GGCTGATGCA GGGCTGGAGA
GCCGAAGTAT GCGGCGACCT GCTCAGTAAT GTCCTCGATG GCAAAATCTC GTTGCGAGTG
GCCGACCCGC AATCGGATCA TCCGCTGGTG TTCGAGTATC GCAGTGATGA AGGGATTGTC
GAGAAAACCT CGCGACTGGG ACCAGCGAAG CGGCCTGTGA GACCATCTCG CCGGAAGCCT
AAATCTTCGT GA
|
|---|
| Protein sequence | MTESLMTQQH EFEAFCKSIR QAGIVGFDTE FISEFTWRPE LCLLQLATPD RAVLVDPFEV
RDLAPWWEIM LDPDVVVVAH GGREEARFCV TNTGQAPVNF KDVQIAEGFR GRSFPLGYDA
LVKRVLGHKS HGKETRSDWR RRPLTKSQVH YALEDVQHIL PIWAKQSADL KKKNRLAWVE
DEFTRLVRDV VLERADEAWL KLPGLHKLNS RELAVAKNVF WWREHEAEAR DKPARRILRD
DLLIELARRQ PANIDELVAT RDMNRTEYRK AAAEILAAID TALALPEDQL PSRPPEPEDD
QSHDEQLLGQ LLGIALANRC AEMNVAMSIV GKTADLRHLV RWHVFGDKRH GTPRLMQGWR
AEVCGDLLSN VLDGKISLRV ADPQSDHPLV FEYRSDEGIV EKTSRLGPAK RPVRPSRRKP
KSS
|
|---|
| |