| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0407 |
|---|
| Symbol | |
|---|
| ID | 9137066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 510626 |
|---|
| End bp | 511885 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_003628456 |
|---|
| Protein GI | 296120678 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACCT TCATGTACGA AGCGATGGAC AACAAGGGCA TGGAAGTCAA GGATACGATT
GAAGCCGCCA CCGAACAGGA GGCTCAATCG AAGATCCGCG AGCGTGGCTT CTATGTCACC
AAGATCTCTG AAAAAGGTCG CACCAAGAAG AAAAAAGACA CAAGCCCAGC CAAGGATGGG
AAGAAGAAAC CCAACGCCCG CAAGAAGGGA ACGTTCACGA TTGGTGGGGT AGGTGCCAAG
CAGCTTTGCA CCTTTACACG GCAATTGTCG ACACTTCAGG ATGCTGGTCT ACCCATTCTT
CGAAGTCTGC GAATTCTGGA AGTGCAGGCC AAGCCTGGTG CCCTTAAGAA CTCCTTGATG
GGCGTCATCG AAGATATTGA ATCCGGTAGC ACTCTATCGG AAGCCATGGG TAAGCAGCCC
AAAGCTTTTG ATAATCTCTA CGTGAACATG GTGAGGGCCG GTGAAGCAGG CGGTGCGTTG
GAAGTGATTC TCCAGCGACT CGCAGAATTC AAAGAACGGC AGCAAAGCCT GAAGCGTAAA
GTTCAAGGCG CCATGATCTA CCCGGCAGCG GTGATCACTG TGGCCACGTT GATCGTGGGC
TTCATTATGT ACTGGATTAT CCCGAAGTTC AAAAAGATCT TCGACGACTT CGGTACGAAA
CTGCCCATGA TGACGGAAGT CTTGATCGGC ACCAGTAGTG CGGTCGTGAA CTACTGGTAC
CTGGGGCCCG TCATTCCGAT TTCGATCTGG CTGCTGATCA AGATTATCAA AAAGAACAAA
ACCGGGGCCT TTGTTGTCGA CTGGATTTCA CTCCGCATTC CCATGCTGGG GCTGATCTTG
AAAAAGTCGA TTATCGCGAG AACGTGCCGC ACGCTGGGAA CACTCGTGGC CTCAGGTGTA
CCGATTCTGG AAGCATTGTC GATTACCCGT GATACCGCTG GAAACGCCGT GTTCGTGAAG
GCTTTCGAGC ACGTCAATGC GGCTATTCGC GAAGGGGAAT CGATGGCTGT TCCTCTCCGA
GAAACAAAAA TTTACGACGA GATCGTCGTC AATATGGTCG ACGTCGGTGA AGAAACGGGA
GCACTCGACA ACATGCTCTA TAAAGTCGCC GATGTCTACG ACGAAGAAGT GGGCGTGCTG
GTCGAAGGTC TGATCAACAT GCTCGAACCA CTCATGGTCG TGGTGCTGGG CTTGATTGTG
GGCTTCATTG TGATTGCCCT CTTCATGCCT CTGATTCAGT TGCTGAACGA CCTGTCCTGA
|
|---|
| Protein sequence | MPTFMYEAMD NKGMEVKDTI EAATEQEAQS KIRERGFYVT KISEKGRTKK KKDTSPAKDG
KKKPNARKKG TFTIGGVGAK QLCTFTRQLS TLQDAGLPIL RSLRILEVQA KPGALKNSLM
GVIEDIESGS TLSEAMGKQP KAFDNLYVNM VRAGEAGGAL EVILQRLAEF KERQQSLKRK
VQGAMIYPAA VITVATLIVG FIMYWIIPKF KKIFDDFGTK LPMMTEVLIG TSSAVVNYWY
LGPVIPISIW LLIKIIKKNK TGAFVVDWIS LRIPMLGLIL KKSIIARTCR TLGTLVASGV
PILEALSITR DTAGNAVFVK AFEHVNAAIR EGESMAVPLR ETKIYDEIVV NMVDVGEETG
ALDNMLYKVA DVYDEEVGVL VEGLINMLEP LMVVVLGLIV GFIVIALFMP LIQLLNDLS
|
|---|
| |